; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031516 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031516
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:41530890..41531351
RNA-Seq ExpressionSpg031516
SyntenySpg031516
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD35472.1 unnamed protein product, partial [Brassica oleracea]6.1e-0732.82Show/hide
Query:  RYLVCNT--------KQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAI
        RYL CNT        + GG GWI+RD     I AG +K+    S    EA+A+   ++       D   ++IE+D+LQL++ +N EE+T        + I
Subjt:  RYLVCNT--------KQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAI

Query:  SAMASKMGKISFKHCPMSSNSIAHTLAREAA
        +A+ S   +I+  + P S N  A  +ARE +
Subjt:  SAMASKMGKISFKHCPMSSNSIAHTLAREAA

XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]3.0e-0631.36Show/hide
Query:  TKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKH
        T+ GGVGW++RD N   + AG +++    S+   E +A+   ++        +  +  ESD+  LV+ LN EE+         +AIS+  S M K+   +
Subjt:  TKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKH

Query:  CPMSSNSIAHTLAREAAL
         P S N IAH +A+E  +
Subjt:  CPMSSNSIAHTLAREAAL

XP_030924493.1 uncharacterized protein LOC115951418 [Quercus lobata]2.1e-0729.91Show/hide
Query:  GVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKHCPMS
        GVG ++RDSN   + +  EKI + +  +  EA A L+ +  TH     ++V  +E DAL L++ L  ++  +S   +  + +    +K  ++ + H   +
Subjt:  GVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKHCPMS

Query:  SNSIAHTLAREAALIQD
         NS+AH LA+ A  I D
Subjt:  SNSIAHTLAREAALIQD

XP_030959121.1 uncharacterized protein LOC115981075 [Quercus lobata]1.2e-0728.69Show/hide
Query:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK
        +++  GVG ++RDS  + + +  EK+ +++  + LEA A L+ +   H     +++  +E DAL L++ L  +E TL    +  E +     K  ++ + 
Subjt:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK

Query:  HCPMSSNSIAHTLAREAALIQD
        H   + NS+AH LA+ A  I D
Subjt:  HCPMSSNSIAHTLAREAALIQD

XP_030964436.1 uncharacterized protein LOC115985655 [Quercus lobata]1.0e-0627.87Show/hide
Query:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK
        +++  GVG ++RDS  + + +  +K+ + +  + +EA A L+ +   H     ++V  +E DAL L++ L  +E  L    +  E +   A K  ++ + 
Subjt:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK

Query:  HCPMSSNSIAHTLAREAALIQD
        H   + NS+AH LA+ A  I D
Subjt:  HCPMSSNSIAHTLAREAALIQD

TrEMBL top hitse value%identityAlignment
A0A3P6ESY2 RNase H domain-containing protein (Fragment)2.9e-0732.82Show/hide
Query:  RYLVCNT--------KQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAI
        RYL CNT        + GG GWI+RD     I AG +K+    S    EA+A+   ++       D   ++IE+D+LQL++ +N EE+T        + I
Subjt:  RYLVCNT--------KQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAI

Query:  SAMASKMGKISFKHCPMSSNSIAHTLAREAA
        +A+ S   +I+  + P S N  A  +ARE +
Subjt:  SAMASKMGKISFKHCPMSSNSIAHTLAREAA

A0A6J1CP26 uncharacterized protein LOC1110134122.5e-0633.33Show/hide
Query:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK
        +T  GG+GWI+RD     I A    I  + +I  LE  AI EG++A     +    I +ESD+L+ +  L+ +    +E     E I  M   M  +S +
Subjt:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK

Query:  HCPMSSNSIAHTLAREA
        H    +N +AH LAR A
Subjt:  HCPMSSNSIAHTLAREA

A0A6J1DNV9 uncharacterized protein LOC1110224039.5e-0627.64Show/hide
Query:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK
        +T +GG+GWI+R  +   + AG   +    ++++LEA AILEG++   N       + IE+D+ ++   LN + + L++T    E I  +      ++F 
Subjt:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFK

Query:  HCPMSSNSIAHTLAREAALIQDA
             +N  AH+LA+ A++++++
Subjt:  HCPMSSNSIAHTLAREAALIQDA

A0A6J1DSV1 uncharacterized protein LOC1110236083.3e-0632.52Show/hide
Query:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHN------QFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKM
        +T  GG+GWI+RD     I A    I  + +I  LE  AI EG++A         Q +    I +ESD+L+ +  L+ +    +E     E I  M   M
Subjt:  NTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHN------QFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKM

Query:  GKISFKHCPMSSNSIAHTLAREA
          +S +H    +N +AH LAR A
Subjt:  GKISFKHCPMSSNSIAHTLAREA

A0A6P5S2T0 uncharacterized protein LOC1107519131.6e-0533.04Show/hide
Query:  QGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKA-THNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKHC
        +GGVGW++RDS+   +CAG E  LR  S  ++E  AI   + A  H Q      + +ESD  + +  LN +    S+       I  + +   ++SF   
Subjt:  QGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKA-THNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKHC

Query:  PMSSNSIAHTLA
        P S N +AHT+A
Subjt:  PMSSNSIAHTLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTACCTGGTTTGCAATACGAAGCAGGGAGGGGTTGGTTGGATCGTCCGTGACTCGAACAGGTCTCCCATCTGCGCTGGAATGGAAAAAATCTTGAGGAAGTGGTC
GATTCAAGTTTTGGAAGCCAAAGCAATCTTAGAAGGGATGAAGGCTACCCACAATCAGTTCGATGATAGCTTGGTGATTAAAATCGAATCTGATGCTCTTCAGCTCGTCA
AATGCTTGAATTTCGAGGAAGATACGCTATCAGAGACCAGCATATTTACGGAAGCCATTTCCGCCATGGCTTCGAAGATGGGTAAAATCTCGTTCAAGCATTGCCCAATG
TCGAGCAATTCGATTGCTCATACCTTAGCACGCGAAGCAGCTTTGATTCAGGACGCCTTTTTTTGTTCGGGTCAGGGGCCTTCCTCTTTCAGGAAGGATTCTTATGTTTT
TTGGTCCTCTAATTATCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCTACCTGGTTTGCAATACGAAGCAGGGAGGGGTTGGTTGGATCGTCCGTGACTCGAACAGGTCTCCCATCTGCGCTGGAATGGAAAAAATCTTGAGGAAGTGGTC
GATTCAAGTTTTGGAAGCCAAAGCAATCTTAGAAGGGATGAAGGCTACCCACAATCAGTTCGATGATAGCTTGGTGATTAAAATCGAATCTGATGCTCTTCAGCTCGTCA
AATGCTTGAATTTCGAGGAAGATACGCTATCAGAGACCAGCATATTTACGGAAGCCATTTCCGCCATGGCTTCGAAGATGGGTAAAATCTCGTTCAAGCATTGCCCAATG
TCGAGCAATTCGATTGCTCATACCTTAGCACGCGAAGCAGCTTTGATTCAGGACGCCTTTTTTTGTTCGGGTCAGGGGCCTTCCTCTTTCAGGAAGGATTCTTATGTTTT
TTGGTCCTCTAATTATCCATAG
Protein sequenceShow/hide protein sequence
MRYLVCNTKQGGVGWIVRDSNRSPICAGMEKILRKWSIQVLEAKAILEGMKATHNQFDDSLVIKIESDALQLVKCLNFEEDTLSETSIFTEAISAMASKMGKISFKHCPM
SSNSIAHTLAREAALIQDAFFCSGQGPSSFRKDSYVFWSSNYP