; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031523 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031523
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold11:38499707..38502490
RNA-Seq ExpressionSpg031523
SyntenySpg031523
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.5e-3250.37Show/hide
Query:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ
        MK +VP KFK+P +K YDG  D + HL+ Y  W D + +++AIRCR F FTLTGS + WF++LK++SI+S KELARAF+ QF G     +P   LLT+KQ
Subjt:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ

Query:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        +  +SL+DY+ RFN+E LQVEG ++   L+    G
Subjt:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]7.1e-3554.48Show/hide
Query:  EEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLT
        EE+MK +VP KFK+PT+K +DG  DLV HL+AY+ WMD + VS+A++CR F  TL+GSA+ WF +LK+ SI+S K LA+AF+ QF+G R   +P   LLT
Subjt:  EEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLT

Query:  VKQQPGKSLRDYITRFNEEALQVEGYSEGATLVA
        +KQ+  +SL DY+ RFNEE LQVEG +   +L+A
Subjt:  VKQQPGKSLRDYITRFNEEALQVEGYSEGATLVA

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]2.3e-3351.85Show/hide
Query:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ
        MK +   KFK+P +  YDG  D + HL+AY+ W D +D+ +AIRCR F FTLTGSA++WF +LK+ SI+S KELA AF+ QF+G R   KP   LLT+KQ
Subjt:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ

Query:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        +  +SL++Y+ RFNEE LQVEG ++   L+A   G
Subjt:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]7.1e-4342.28Show/hide
Query:  EEVDAKIVALEDKEG----LIRDPRKGKEPVEHVEESKTRPKGKETNSATSKVR-GLKIAERTIL----------RSPEPKLG----------------N
        E    +   LEDKE     L+RDP+KGK P E   E       + TNS  SK+R G    +RT +          +SP P  G                 
Subjt:  EEVDAKIVALEDKEG----LIRDPRKGKEPVEHVEESKTRPKGKETNSATSKVR-GLKIAERTIL----------RSPEPKLG----------------N

Query:  PRGDLQKSKDPREQ------DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERL
           D  +S + R        DLE+L+DQ D  FTEE+M+ +VP KFK+PT+K +D   D V HL+AY+ WMD + VS+A+RCR F  TL GSA+ WF +L
Subjt:  PRGDLQKSKDPREQ------DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERL

Query:  KKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        K+ SI+S K LARAF+ QF+G R   +P   LLT+KQ+  +SLRDY+ RFNEE LQVEG ++  +L+A   G
Subjt:  KKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.3e-4054.61Show/hide
Query:  DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFM
        DLE+L+ Q D  FTEE+M+ +VP KFK+PT+KP+DG  + V HL+AY+ WMD + VSDAIRCR F  TL GSA+ WF +LK+ SI+S K LARAF+ QF+
Subjt:  DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFM

Query:  GAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        G R   +P   LLT+KQ+  +SL DY+ RFNEE LQ+EG ++  +L+A   G
Subjt:  GAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.2e-3250.37Show/hide
Query:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ
        MK +VP KFK+P +K YDG  D + HL+ Y  W D + +++AIRCR F FTLTGS + WF++LK++SI+S KELARAF+ QF G     +P   LLT+KQ
Subjt:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ

Query:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        +  +SL+DY+ RFN+E LQVEG ++   L+    G
Subjt:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

A0A6J1D7D2 uncharacterized protein LOC1110183073.4e-3554.48Show/hide
Query:  EEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLT
        EE+MK +VP KFK+PT+K +DG  DLV HL+AY+ WMD + VS+A++CR F  TL+GSA+ WF +LK+ SI+S K LA+AF+ QF+G R   +P   LLT
Subjt:  EEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLT

Query:  VKQQPGKSLRDYITRFNEEALQVEGYSEGATLVA
        +KQ+  +SL DY+ RFNEE LQVEG +   +L+A
Subjt:  VKQQPGKSLRDYITRFNEEALQVEGYSEGATLVA

A0A6J1DWY0 uncharacterized protein LOC1110252933.4e-4342.28Show/hide
Query:  EEVDAKIVALEDKEG----LIRDPRKGKEPVEHVEESKTRPKGKETNSATSKVR-GLKIAERTIL----------RSPEPKLG----------------N
        E    +   LEDKE     L+RDP+KGK P E   E       + TNS  SK+R G    +RT +          +SP P  G                 
Subjt:  EEVDAKIVALEDKEG----LIRDPRKGKEPVEHVEESKTRPKGKETNSATSKVR-GLKIAERTIL----------RSPEPKLG----------------N

Query:  PRGDLQKSKDPREQ------DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERL
           D  +S + R        DLE+L+DQ D  FTEE+M+ +VP KFK+PT+K +D   D V HL+AY+ WMD + VS+A+RCR F  TL GSA+ WF +L
Subjt:  PRGDLQKSKDPREQ------DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERL

Query:  KKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        K+ SI+S K LARAF+ QF+G R   +P   LLT+KQ+  +SLRDY+ RFNEE LQVEG ++  +L+A   G
Subjt:  KKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

A0A6J1DZ49 uncharacterized protein LOC1110248511.1e-3351.85Show/hide
Query:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ
        MK +   KFK+P +  YDG  D + HL+AY+ W D +D+ +AIRCR F FTLTGSA++WF +LK+ SI+S KELA AF+ QF+G R   KP   LLT+KQ
Subjt:  MKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQ

Query:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        +  +SL++Y+ RFNEE LQVEG ++   L+A   G
Subjt:  QPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

A0A6J1E1E7 uncharacterized protein LOC1110255482.1e-4054.61Show/hide
Query:  DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFM
        DLE+L+ Q D  FTEE+M+ +VP KFK+PT+KP+DG  + V HL+AY+ WMD + VSDAIRCR F  TL GSA+ WF +LK+ SI+S K LARAF+ QF+
Subjt:  DLEKLIDQVDLSFTEEVMKAEVPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFM

Query:  GAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG
        G R   +P   LLT+KQ+  +SL DY+ RFNEE LQ+EG ++  +L+A   G
Subjt:  GAREHRKPHINLLTVKQQPGKSLRDYITRFNEEALQVEGYSEGATLVAITRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAGGAAGCAGAGAAATGGAGTCTGCTTTTGCCGTGGCTCGAAGATTTTCGTCCACAGCGATGAGAGAATCCGTGTCTGGAAATGGGCGGGAACAGATATTGT
TATGGGTAATTCTGGACCATTCTGGAATATGAGGAACAAACAAGGACAACGCAACACCAACCCAAGGACACGATCAGGAAGTGGACCCCAGAGGAGAGCATCAGAGGCGG
TGTGGCAAGCACCACACCGGTGTGTAGTTTTCCCTGTCTTGCAGGCCACGTCTTCCCCCTCTCATACAAATTTACCGTTGGTGGCACGTGAAGGTCAGACGAACAGGTTA
GGGAGCCGAGGCCGAGGAGAAGAAGTTGACGCCAAAATTGTTGCCCTTGAGGATAAGGAAGGCTTGATTAGAGACCCAAGGAAGGGGAAGGAGCCAGTCGAGCACGTGGA
AGAGTCGAAGACAAGACCAAAGGGAAAAGAGACCAACAGCGCAACCAGTAAGGTCAGGGGGCTGAAGATTGCAGAACGCACAATTCTGAGGAGTCCAGAACCAAAGCTCG
GAAATCCTCGGGGAGACCTGCAGAAGTCAAAGGACCCTAGAGAACAAGACTTGGAAAAACTGATCGATCAAGTCGACCTGTCCTTCACGGAAGAAGTCATGAAAGCTGAG
GTGCCCCAGAAGTTCAAGGTACCTACATTAAAACCGTATGATGGCAGGAAAGACCTCGTGCAACATCTAAACGCCTACAAAAACTGGATGGACTTCCACGACGTCTCAGA
TGCAATCAGGTGTCGCACATTCTTTTTCACTCTGACAGGATCAGCCAAGCATTGGTTTGAAAGGTTGAAAAAGAGATCAATCAACTCTTTAAAGGAATTAGCCCGAGCGT
TCCTCGCTCAGTTTATGGGAGCCAGAGAACATCGCAAGCCTCACATCAACCTCTTAACCGTCAAACAGCAGCCAGGTAAGAGCTTGCGCGATTATATAACACGTTTTAAC
GAGGAAGCGCTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAGTAGCCATCACAAGAGGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAGGAAGCAGAGAAATGGAGTCTGCTTTTGCCGTGGCTCGAAGATTTTCGTCCACAGCGATGAGAGAATCCGTGTCTGGAAATGGGCGGGAACAGATATTGT
TATGGGTAATTCTGGACCATTCTGGAATATGAGGAACAAACAAGGACAACGCAACACCAACCCAAGGACACGATCAGGAAGTGGACCCCAGAGGAGAGCATCAGAGGCGG
TGTGGCAAGCACCACACCGGTGTGTAGTTTTCCCTGTCTTGCAGGCCACGTCTTCCCCCTCTCATACAAATTTACCGTTGGTGGCACGTGAAGGTCAGACGAACAGGTTA
GGGAGCCGAGGCCGAGGAGAAGAAGTTGACGCCAAAATTGTTGCCCTTGAGGATAAGGAAGGCTTGATTAGAGACCCAAGGAAGGGGAAGGAGCCAGTCGAGCACGTGGA
AGAGTCGAAGACAAGACCAAAGGGAAAAGAGACCAACAGCGCAACCAGTAAGGTCAGGGGGCTGAAGATTGCAGAACGCACAATTCTGAGGAGTCCAGAACCAAAGCTCG
GAAATCCTCGGGGAGACCTGCAGAAGTCAAAGGACCCTAGAGAACAAGACTTGGAAAAACTGATCGATCAAGTCGACCTGTCCTTCACGGAAGAAGTCATGAAAGCTGAG
GTGCCCCAGAAGTTCAAGGTACCTACATTAAAACCGTATGATGGCAGGAAAGACCTCGTGCAACATCTAAACGCCTACAAAAACTGGATGGACTTCCACGACGTCTCAGA
TGCAATCAGGTGTCGCACATTCTTTTTCACTCTGACAGGATCAGCCAAGCATTGGTTTGAAAGGTTGAAAAAGAGATCAATCAACTCTTTAAAGGAATTAGCCCGAGCGT
TCCTCGCTCAGTTTATGGGAGCCAGAGAACATCGCAAGCCTCACATCAACCTCTTAACCGTCAAACAGCAGCCAGGTAAGAGCTTGCGCGATTATATAACACGTTTTAAC
GAGGAAGCGCTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAGTAGCCATCACAAGAGGA
Protein sequenceShow/hide protein sequence
MAERKQRNGVCFCRGSKIFVHSDERIRVWKWAGTDIVMGNSGPFWNMRNKQGQRNTNPRTRSGSGPQRRASEAVWQAPHRCVVFPVLQATSSPSHTNLPLVAREGQTNRL
GSRGRGEEVDAKIVALEDKEGLIRDPRKGKEPVEHVEESKTRPKGKETNSATSKVRGLKIAERTILRSPEPKLGNPRGDLQKSKDPREQDLEKLIDQVDLSFTEEVMKAE
VPQKFKVPTLKPYDGRKDLVQHLNAYKNWMDFHDVSDAIRCRTFFFTLTGSAKHWFERLKKRSINSLKELARAFLAQFMGAREHRKPHINLLTVKQQPGKSLRDYITRFN
EEALQVEGYSEGATLVAITRG