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Spg031799 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031799
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold11:36256689..36257257
RNA-Seq ExpressionSpg031799
SyntenySpg031799
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-0734.38Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK
        T+ + WD  ++ WNL+PRRPL DREI    ++   L I +++GG + ++W  + +G ++ ASAK    Q   E    +L+    +  LW++  PKK
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK

KAA0057616.1 putative isomerase BH0283-like protein [Cucumis melo var. makuwa]2.1e-0633.98Show/hide
Query:  VLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQ-PQDL-SVIFSNLWRAPFPKKSNSSF
        V + WD   + WN  PRRPL +RE  + + + +SLP  + +   D L+WN  S   ++  SAK  + + +   Q PQ   S+ + NLW +  P KS +  
Subjt:  VLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQ-PQDL-SVIFSNLWRAPFPKKSNSSF

Query:  GLL
         LL
Subjt:  GLL

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-0734.04Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK
        TV + WD ++  WN+ PRRPL +RE    E +  SLP    + G+   LW      ++S+ASAKDL ++ +   +  +      +LWR+  P+K
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-0734.38Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK
        T+ + WD  ++ WNL+PRRPL DREI    ++   L I +++GG + ++W  + +G ++ ASAK    Q   E    +L+    +  LW++  PKK
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]4.1e-0734.04Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK
        ++ + W++  + W+LYPRRPL   E    EDM  SLP P    G D   W  ++ G F++AS K      + ++  +D   I++NLW++  PK+
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein1.5e-0734.38Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK
        T+ + WD  ++ WNL+PRRPL DREI    ++   L I +++GG + ++W  + +G ++ ASAK    Q   E    +L+    +  LW++  PKK
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein2.2e-0632.98Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK
        TV + WD  S  WN+ PRRPL +RE  + + +  SLP    + G+    WN      +++ASAKD+ ++ S   +  +      +LWR+  P+K
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK

A0A5A7UU00 Putative isomerase BH0283-like protein9.9e-0733.98Show/hide
Query:  VLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQ-PQDL-SVIFSNLWRAPFPKKSNSSF
        V + WD   + WN  PRRPL +RE  + + + +SLP  + +   D L+WN  S   ++  SAK  + + +   Q PQ   S+ + NLW +  P KS +  
Subjt:  VLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQ-PQDL-SVIFSNLWRAPFPKKSNSSF

Query:  GLL
         LL
Subjt:  GLL

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein6.9e-0834.04Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK
        TV + WD ++  WN+ PRRPL +RE    E +  SLP    + G+   LW      ++S+ASAKDL ++ +   +  +      +LWR+  P+K
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKK

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.5e-0734.38Show/hide
Query:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK
        T+ + WD  ++ WNL+PRRPL DREI    ++   L I +++GG + ++W  + +G ++ ASAK    Q   E    +L+    +  LW++  PKK
Subjt:  TVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSV--IFSNLWRAPFPKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTCTTGGATGCTTGGGACTCTACCTCTTCATCTTGGAACCTTTATCCTAGAAGGCCATTGTTAGATAGGGAGATTTGCTCTCAGGAAGATATGGTTTCCTCCCT
TCCAATTCCTTCTATATCTGGAGGTGTGGATACATTGCTTTGGAACCATCATTCTCAAGGTCTTTTTTCCATTGCTTCAGCCAAGGATCTGTATTGGCAACCATCTTATG
AGGACCAGCCTCAAGATCTCTCGGTCATCTTCTCGAATCTTTGGAGGGCCCCGTTTCCAAAAAAATCAAATTCTTCATTTGGACTATTATGCATAGGAGACATTCATATG
CCAATGCCAAACCATGCAAATTGGTTATGTGAGGGGGCCTTTTCCTTCAAAGCAGATTCGCAGCGGGAGATTCTCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGTCTTGGATGCTTGGGACTCTACCTCTTCATCTTGGAACCTTTATCCTAGAAGGCCATTGTTAGATAGGGAGATTTGCTCTCAGGAAGATATGGTTTCCTCCCT
TCCAATTCCTTCTATATCTGGAGGTGTGGATACATTGCTTTGGAACCATCATTCTCAAGGTCTTTTTTCCATTGCTTCAGCCAAGGATCTGTATTGGCAACCATCTTATG
AGGACCAGCCTCAAGATCTCTCGGTCATCTTCTCGAATCTTTGGAGGGCCCCGTTTCCAAAAAAATCAAATTCTTCATTTGGACTATTATGCATAGGAGACATTCATATG
CCAATGCCAAACCATGCAAATTGGTTATGTGAGGGGGCCTTTTCCTTCAAAGCAGATTCGCAGCGGGAGATTCTCATTTAG
Protein sequenceShow/hide protein sequence
MTVLDAWDSTSSSWNLYPRRPLLDREICSQEDMVSSLPIPSISGGVDTLLWNHHSQGLFSIASAKDLYWQPSYEDQPQDLSVIFSNLWRAPFPKKSNSSFGLLCIGDIHM
PMPNHANWLCEGAFSFKADSQREILI