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Spg031805 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031805
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionExosome complex component RRP41
Genome locationscaffold11:43795659..43799012
RNA-Seq ExpressionSpg031805
SyntenySpg031805
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3006290.1 exosome complex component RRP41 homolog [Olea europaea subsp. europaea]2.2e-0778.57Show/hide
Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLL
        VTLLQMDAKL +DIFEN MQLAIEGCKAVA++IREVR   L+
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLL

GFS38750.1 3'-5'-exoribonuclease family protein [Actinidia rufa]2.5e-0838.97Show/hide
Query:  FEVIHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNI
        F+ I+ DI  +SPD+  MH D  NAS SG     +           IP     TS +      +N   L +  ++  ++G         + V    +++ 
Subjt:  FEVIHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNI

Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        VTLLQMDAKL +D FEN MQLAIEGCKAVA++IREV
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

KAE8716857.1 3'-5'-exoribonuclease family protein isoform 2 [Hibiscus syriacus]1.7e-0737.59Show/hide
Query:  IHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNIVTL
        ++GDI  + PD+ G+HFD+ NAS SG     +           IP     TS +      +N   L +  +I  ++G         + V    + + VTL
Subjt:  IHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNIVTL

Query:  LQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        LQM+AKL VDIFEN M LA+EGCKAVA++I+E+
Subjt:  LQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

KAF8412155.1 hypothetical protein HHK36_000111 [Tetracentron sinense]4.3e-0864.81Show/hide
Query:  LNVAWFTRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLLI
        + V    + + VTLLQMDAKL +DIFEN MQLAIEGCKA+A++IREVRT QL++
Subjt:  LNVAWFTRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLLI

XP_023875522.1 exosome complex component RRP41 homolog [Quercus suber]1.6e-1039.72Show/hide
Query:  IHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKLIPPPPEFTSRNKKDESDVNLHFLSNFFFISITSG--SFVLILVFY---------LNVAWFTRTNIV
        IH DI SYSPD   +H DT +ASVSG     +            N    +  +          S +SG  +F L+ + Y         LNV +  + +  
Subjt:  IHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKLIPPPPEFTSRNKKDESDVNLHFLSNFFFISITSG--SFVLILVFY---------LNVAWFTRTNIV

Query:  TLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLL
        T+LQMD+KL +DIFEN MQLAIEGCKAVA++IREV+ ++ L
Subjt:  TLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLL

TrEMBL top hitse value%identityAlignment
A0A0D2TCT2 Uncharacterized protein5.2e-0784.21Show/hide
Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRT
        VTLLQMDAKL VDIFEN M LAIEGCKA+A++IREVRT
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRT

A0A199VDA5 Exosome complex component RRP411.8e-0767.35Show/hide
Query:  LNVAWFTRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRT
        + V   ++ + VTLLQMDAKL +DIFEN MQLAIEGCKA+A++IREVRT
Subjt:  LNVAWFTRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRT

A0A6A3BLB5 3'-5'-exoribonuclease family protein isoform 28.0e-0837.59Show/hide
Query:  IHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNIVTL
        ++GDI  + PD+ G+HFD+ NAS SG     +           IP     TS +      +N   L +  +I  ++G         + V    + + VTL
Subjt:  IHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNIVTL

Query:  LQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        LQM+AKL VDIFEN M LA+EGCKAVA++I+E+
Subjt:  LQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

A0A6J1DWZ5 exosome complex component RRP41 homolog3.0e-0770.21Show/hide
Query:  LNVAWFTRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        + V +  + + VTLLQMDAKL +DIFEN MQLAIEGCKAVAS+IREV
Subjt:  LNVAWFTRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

A0A7J0DN15 3'-5'-exoribonuclease family protein1.2e-0838.97Show/hide
Query:  FEVIHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNI
        F+ I+ DI  +SPD+  MH D  NAS SG     +           IP     TS +      +N   L +  ++  ++G         + V    +++ 
Subjt:  FEVIHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKL---------IPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWFTRTNI

Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        VTLLQMDAKL +D FEN MQLAIEGCKAVA++IREV
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

SwissProt top hitse value%identityAlignment
Q9SP08 Exosome complex component RRP41 homolog6.8e-0463.89Show/hide
Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        V+LLQMDAKL ++ FE    LA EGCKA+A  IREV
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

Arabidopsis top hitse value%identityAlignment
AT3G61620.1 3'-5'-exoribonuclease family protein4.8e-0563.89Show/hide
Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        V+LLQMDAKL ++ FE    LA EGCKA+A  IREV
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV

AT3G61620.2 3'-5'-exoribonuclease family protein4.8e-0563.89Show/hide
Query:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV
        V+LLQMDAKL ++ FE    LA EGCKA+A  IREV
Subjt:  VTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAACACCAAATTTCTTGCTGCTATGCTTGTATCTACCTCTTTCAAAATGCAACGAACATTAGCACTTTTTGAGGTGATCCATGGAGATATCTTTAGTTATTCGCC
AGACAATGAAGGTATGCATTTTGACACATTTAATGCCTCGGTCTCAGGTTATCTCCTTGTGAATGTTAAGCTGATTCCTCCTCCCCCCGAATTCACTAGCCGCAACAAAA
AGGATGAATCGGATGTGAACCTCCATTTTTTGTCCAACTTTTTCTTTATCTCCATAACTTCTGGTTCTTTCGTTCTCATCCTTGTCTTTTATTTGAATGTTGCATGGTTC
ACAAGAACTAATATAGTCACCCTTCTTCAGATGGATGCCAAATTAACTGTTGATATATTTGAGAATGCTATGCAGCTTGCCATTGAGGGCTGCAAAGCCGTGGCTAGTTT
CATCCGAGAAGTAAGGACTTCTCAACTTCTGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAACACCAAATTTCTTGCTGCTATGCTTGTATCTACCTCTTTCAAAATGCAACGAACATTAGCACTTTTTGAGGTGATCCATGGAGATATCTTTAGTTATTCGCC
AGACAATGAAGGTATGCATTTTGACACATTTAATGCCTCGGTCTCAGGTTATCTCCTTGTGAATGTTAAGCTGATTCCTCCTCCCCCCGAATTCACTAGCCGCAACAAAA
AGGATGAATCGGATGTGAACCTCCATTTTTTGTCCAACTTTTTCTTTATCTCCATAACTTCTGGTTCTTTCGTTCTCATCCTTGTCTTTTATTTGAATGTTGCATGGTTC
ACAAGAACTAATATAGTCACCCTTCTTCAGATGGATGCCAAATTAACTGTTGATATATTTGAGAATGCTATGCAGCTTGCCATTGAGGGCTGCAAAGCCGTGGCTAGTTT
CATCCGAGAAGTAAGGACTTCTCAACTTCTGATTTGA
Protein sequenceShow/hide protein sequence
MGNTKFLAAMLVSTSFKMQRTLALFEVIHGDIFSYSPDNEGMHFDTFNASVSGYLLVNVKLIPPPPEFTSRNKKDESDVNLHFLSNFFFISITSGSFVLILVFYLNVAWF
TRTNIVTLLQMDAKLTVDIFENAMQLAIEGCKAVASFIREVRTSQLLI