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Spg031819 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031819
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:42263573..42264677
RNA-Seq ExpressionSpg031819
SyntenySpg031819
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7825130.1 putative RNA-directed DNA polymerase [Senna tora]6.9e-0831.82Show/hide
Query:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN
        +DAS  E  G  GI  V+R++QG  + A  K+I     +DLLEA A  EGL    ++      ++I+E ++K ++D +N   PNLS +  ++D++R    
Subjt:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN

Query:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ
            +   W P   N VAH +      ++ SQ
Subjt:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ

RYR23494.1 hypothetical protein Ahy_B03g068708 [Arachis hypogaea]4.9e-0631.82Show/hide
Query:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN
        +DA++ E L  G    V RD  G+L+ A N +I    P+   EA+A++EGL   +   +     +I ES+S  LI +L  +   ++E Q +LD++  +A 
Subjt:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN

Query:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ
        ++ +  F+W P  GN +AH + +  A  S  Q
Subjt:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]2.2e-0633.33Show/hide
Query:  NEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIANDMKDI
        ++ +GLG I   +RD +G ++    K+   R  + L EA AI  GL    +I S   +SLIVES+ K +++ LN+   + +E+  +L +VR  + + K +
Subjt:  NEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIANDMKDI

Query:  EFSWCPIPGNGVAHVLERNVARVSSS
        +FS+ P   N  AH L +   R SS+
Subjt:  EFSWCPIPGNGVAHVLERNVARVSSS

XP_020960337.1 uncharacterized protein LOC110263435 [Arachis ipaensis]4.9e-0631.82Show/hide
Query:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN
        +DA++ E L  G    V RD  G+L+ A N +I    P+   EA+A++EGL   +   +     +I ES+S  LI +L  +   ++E Q +LD++  +A 
Subjt:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN

Query:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ
        ++ +  F+W P  GN +AH + +  A  S  Q
Subjt:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.9e-0730Show/hide
Query:  DASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAND
        DASW+++   GGI W+IR + G +V+A N+ +     + LLEA AI EGL N   +  +    L +E++S  +   LN +  +L++   V++E+  + + 
Subjt:  DASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAND

Query:  MKDIEFSWCPIPGNGVAHVLERNVARVSSS
         + + F+      NG AH L +  + +  S
Subjt:  MKDIEFSWCPIPGNGVAHVLERNVARVSSS

TrEMBL top hitse value%identityAlignment
A0A445AAK0 CCHC-type domain-containing protein2.4e-0631.82Show/hide
Query:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN
        +DA++ E L  G    V RD  G+L+ A N +I    P+   EA+A++EGL   +   +     +I ES+S  LI +L  +   ++E Q +LD++  +A 
Subjt:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN

Query:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ
        ++ +  F+W P  GN +AH + +  A  S  Q
Subjt:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQ

A0A484KIR9 RNase H domain-containing protein1.2e-0530.77Show/hide
Query:  GICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEV-RLIANDMKDIEFSWCP
        G+ +++RD++G  V A++ +    +     EA+A+KE LS    I S     ++VE++ K ++DSLN  I + S   S++++  RL      D+ F + P
Subjt:  GICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEV-RLIANDMKDIEFSWCP

Query:  IPGNGVAHVLERNVARVSSSQPQSGFAGLR
          GN  AH+L R+      S+ + G  G R
Subjt:  IPGNGVAHVLERNVARVSSSQPQSGFAGLR

A0A484NTV6 Uncharacterized protein1.5e-0532.74Show/hide
Query:  GICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEV-RLIANDMKDIEFSWCP
        G+C+++RD++G  V A++ +    +     EA+A+KE LS    I S     ++VE++ K ++DSLN  I + S   S++++  RL      D+ F + P
Subjt:  GICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEV-RLIANDMKDIEFSWCP

Query:  IPGNGVAHVLERN
          GN  AH+L R+
Subjt:  IPGNGVAHVLERN

A0A6J1DNV9 uncharacterized protein LOC1110224034.8e-0730Show/hide
Query:  DASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAND
        DASW+++   GGI W+IR + G +V+A N+ +     + LLEA AI EGL N   +  +    L +E++S  +   LN +  +L++   V++E+  + + 
Subjt:  DASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAND

Query:  MKDIEFSWCPIPGNGVAHVLERNVARVSSS
         + + F+      NG AH L +  + +  S
Subjt:  MKDIEFSWCPIPGNGVAHVLERNVARVSSS

A0A803PA86 Uncharacterized protein1.2e-0530.66Show/hide
Query:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN
        +DA+  EA    G+ WV RD +G L+    K  N +   +L EA+ I+E LS ++K   + Q  +++E++  S++ +L   I  +S    V++E + + N
Subjt:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIAN

Query:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQPQSGF
        D++ +   +     N VAH L    AR S S P   F
Subjt:  DMKDIEFSWCPIPGNGVAHVLERNVARVSSSQPQSGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein4.3e-0832.8Show/hide
Query:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEIN------KRWPIDL-LEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLD
        +DA+W +   L G  WV +    S      KEI       +R+P  L  EA AIK  +   L  + + ++ L+V S+SKS++D+LN  + +L+E+  +L 
Subjt:  MDASWNEALGLGGICWVIRDFQGSLVIARNKEIN------KRWPIDL-LEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLD

Query:  EVRLIANDMKDIEFSWCPIPGNGVA
        E+R I N  + I F + P   N +A
Subjt:  EVRLIANDMKDIEFSWCPIPGNGVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCCTCCTGGAACGAGGCACTAGGGCTTGGAGGCATATGTTGGGTAATCCGTGACTTTCAAGGATCTTTGGTGATTGCTCGGAATAAGGAAATCAACAAGAGATG
GCCAATTGACCTGCTAGAAGCAATGGCGATCAAAGAAGGGTTATCGAATTACCTCAAAATCGTCTCAATTCCCCAGGCTTCTTTGATTGTTGAATCGAATTCTAAGTCCC
TGATTGATTCGCTAAACCATCAGATCCCAAACCTTTCGGAAGTCCAATCTGTGCTGGATGAAGTAAGGTTGATTGCAAATGATATGAAGGATATCGAATTCTCTTGGTGT
CCTATACCCGGTAACGGTGTAGCGCATGTTCTTGAGCGTAATGTTGCTCGTGTGTCGTCGTCTCAACCTCAGTCGGGTTTTGCTGGTCTTAGAGATCCTTTTGTCGCTTT
CAATCGCTCTCCCTCTTCCTCTTACCCAAAAGATTGTTTTTTTGGTAGGGAGTTGATTTTGCCATTTTGGTCGTCCTCTGCTATAATTGAGGATTCTTCACGAGATGTCG
CCTTAGATGTTACTGCTTTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCCTCCTGGAACGAGGCACTAGGGCTTGGAGGCATATGTTGGGTAATCCGTGACTTTCAAGGATCTTTGGTGATTGCTCGGAATAAGGAAATCAACAAGAGATG
GCCAATTGACCTGCTAGAAGCAATGGCGATCAAAGAAGGGTTATCGAATTACCTCAAAATCGTCTCAATTCCCCAGGCTTCTTTGATTGTTGAATCGAATTCTAAGTCCC
TGATTGATTCGCTAAACCATCAGATCCCAAACCTTTCGGAAGTCCAATCTGTGCTGGATGAAGTAAGGTTGATTGCAAATGATATGAAGGATATCGAATTCTCTTGGTGT
CCTATACCCGGTAACGGTGTAGCGCATGTTCTTGAGCGTAATGTTGCTCGTGTGTCGTCGTCTCAACCTCAGTCGGGTTTTGCTGGTCTTAGAGATCCTTTTGTCGCTTT
CAATCGCTCTCCCTCTTCCTCTTACCCAAAAGATTGTTTTTTTGGTAGGGAGTTGATTTTGCCATTTTGGTCGTCCTCTGCTATAATTGAGGATTCTTCACGAGATGTCG
CCTTAGATGTTACTGCTTTACCTTGA
Protein sequenceShow/hide protein sequence
MDASWNEALGLGGICWVIRDFQGSLVIARNKEINKRWPIDLLEAMAIKEGLSNYLKIVSIPQASLIVESNSKSLIDSLNHQIPNLSEVQSVLDEVRLIANDMKDIEFSWC
PIPGNGVAHVLERNVARVSSSQPQSGFAGLRDPFVAFNRSPSSSYPKDCFFGRELILPFWSSSAIIEDSSRDVALDVTALP