CuGenDBv2

Gene ID	Spg031834
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein PAIR1 isoform X1
Genome location	scaffold11:43339752..43340839
RNA-Seq Expression	Spg031834
Synteny	Spg031834
Gene Ontology terms	GO:0009553 - embryo sac development (biological process) GO:0009555 - pollen development (biological process) GO:0042138 - meiotic DNA double-strand break formation (biological process) GO:0048236 - plant-type sporogenesis (biological process) GO:0051026 - chiasma assembly (biological process)
InterPro domains	IPR034546 - Protein PAIR1

Homology

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GenBank top hits

e value

%identity

Alignment

TYK17600.1 protein PAIR1 isoform X1 [Cucumis melo var. makuwa]

1.5e-30

82.47

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Query:  FSCSFDRTVEEFLASQSLRGRCFNQMRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        ++ SFDR VEE+LASQS     F QMRLKINKACDLSSISVLPP  +R NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  FSCSFDRTVEEFLASQSLRGRCFNQMRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

XP_008438046.1 PREDICTED: protein PAIR1 isoform X1 [Cucumis melo]

6.4e-26

94.44

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRR NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

XP_008438047.1 PREDICTED: protein PAIR1 isoform X2 [Cucumis melo]

6.4e-26

94.44

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRR NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

XP_038882627.1 putative recombination initiation defects 3 isoform X1 [Benincasa hispida]

1.7e-26

95.83

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

XP_038882642.1 putative recombination initiation defects 3 isoform X2 [Benincasa hispida]

1.7e-26

95.83

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AV35 protein PAIR1 isoform X2

3.1e-26

94.44

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRR NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

A0A1S3AVJ5 protein PAIR1 isoform X3

3.1e-26

94.44

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRR NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

A0A1S4DSK1 protein PAIR1 isoform X1

3.1e-26

94.44

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRR NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

A0A5D3D1V5 Protein PAIR1 isoform X1

7.2e-31

82.47

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Query:  FSCSFDRTVEEFLASQSLRGRCFNQMRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        ++ SFDR VEE+LASQS     F QMRLKINKACDLSSISVLPP  +R NALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTNEQ
Subjt:  FSCSFDRTVEEFLASQSLRGRCFNQMRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

A0A6J1D1C7 protein PAIR1 isoform X1

5.0e-24

91.67

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ
        MRLKINKACDLSSISVLPP SRRSNA  TGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ+SFDE+VTN+Q
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQSSFDEIVTNEQ

SwissProt top hits

e value

%identity

Alignment

Q0WWX5 Putative recombination initiation defects 3

6.1e-11

45.79

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Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQH---GMYSQLSQSSFDEIVTNEQVNLGSSLDFSGCKTLFVYKEMEEKK
        M++ INKACDL SISV PP  RRS      Q + QLRSQ SQQSFSQG SS     G +SQ++QSS DE++ N+Q       D S  K       +  K+
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQH---GMYSQLSQSSFDEIVTNEQVNLGSSLDFSGCKTLFVYKEMEEKK

Query:  ANDTKVA
         +   VA
Subjt:  ANDTKVA

Q75RY2 Protein PAIR1

1.9e-04

49.35

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Query:  MRLKINKACDLSSISVLPP--PSRRSNALTTGQQAPQLRSQP-------SQQSFSQGLSSQ--HGMYSQLSQSSFDE
        M+LK+NKACD++SISVLPP      S A  +G  A  + SQP       SQQSFSQG S+   H   SQ SQ S D+
Subjt:  MRLKINKACDLSSISVLPP--PSRRSNALTTGQQAPQLRSQP-------SQQSFSQGLSSQ--HGMYSQLSQSSFDE

Arabidopsis top hits

e value

%identity

Alignment

AT1G01690.1 putative recombination initiation defects 3

4.3e-12

45.79

Show/hide

Query:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQH---GMYSQLSQSSFDEIVTNEQVNLGSSLDFSGCKTLFVYKEMEEKK
        M++ INKACDL SISV PP  RRS      Q + QLRSQ SQQSFSQG SS     G +SQ++QSS DE++ N+Q       D S  K       +  K+
Subjt:  MRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQH---GMYSQLSQSSFDEIVTNEQVNLGSSLDFSGCKTLFVYKEMEEKK

Query:  ANDTKVA
         +   VA
Subjt:  ANDTKVA

Sequences

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CDS sequence

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TTGGAAAGCCTTTCCATCTCTGTACTGCAAGCAAAACGATTGTTGGTTGCGATTCGCGATCGTTCTTTCACCTTCTCCTGCAGTTTTGATCGAACAGTTGAAGAGTTTTT
GGCTTCTCAGTCTTTGCGCGGAAGGTGTTTCAATCAAATGCGGCTGAAGATAAACAAGGCCTGCGATCTCAGCTCGATATCTGTTCTTCCTCCTCCATCCAGGAGGTCAA
ATGCGTTAACTACTGGGCAGCAAGCACCACAGTTGCGATCACAACCTTCGCAACAATCCTTTTCGCAGGGACTGTCATCTCAGCACGGCATGTATTCTCAGCTCTCTCAG
AGCTCATTTGACGAAATCGTGACAAACGAACAGGTCAATCTCGGTTCTTCTCTGGATTTTTCAGGTTGTAAAACTTTGTTTGTCTATAAAGAAATGGAGGAAAAGAAAGC
AAATGACACTAAAGTTGCATGGCTCTCTGTCATTCCGCTTCTACGTATTTCAGGCGTTAAACAGTGA

mRNA sequence

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Protein sequence

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LESLSISVLQAKRLLVAIRDRSFTFSCSFDRTVEEFLASQSLRGRCFNQMRLKINKACDLSSISVLPPPSRRSNALTTGQQAPQLRSQPSQQSFSQGLSSQHGMYSQLSQ
SSFDEIVTNEQVNLGSSLDFSGCKTLFVYKEMEEKKANDTKVAWLSVIPLLRISGVKQ

Spg031834 (gene) of Sponge gourd (cylindrica) v1 genome