; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031885 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031885
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationscaffold11:43212157..43217559
RNA-Seq ExpressionSpg031885
SyntenySpg031885
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY41187.1 hypothetical protein CUMW_057510 [Citrus unshiu]6.6e-9567.39Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQ--------LLRTSFLF--SHSTAEIWTCYINDPAAVIPVSVQHDHHMKL
        SEREYFAVPKNLKLLAVPLFELYDNVQ        LL   FL+  ++  AEIW  Y N  +    + VQ+D+ + L
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQ--------LLRTSFLF--SHSTAEIWTCYINDPAAVIPVSVQHDHHMKL

KAG5538419.1 hypothetical protein RHGRI_019112 [Rhododendron griersonianum]7.3e-9468.13Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL-NLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELEN
        MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAILL ++S  L  + +        YLS                 C  EN
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL-NLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELEN

Query:  MGSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVH
          +  +VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGL+RKL+SKLGANSP+LQP+WQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VH
Subjt:  MGSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVH

Query:  LSEREYFAVPKNLKLLAVPLFELYDNVQL-------LRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMK
        LSEREYFAVPKNLKLLAVPLFELYDNVQ            +   +   EIW  YIN+  A   V  Q+D  +K
Subjt:  LSEREYFAVPKNLKLLAVPLFELYDNVQL-------LRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMK

KDO60020.1 hypothetical protein CISIN_1g039176mg, partial [Citrus sinensis]1.1e-9267.67Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKL
        SEREYFAVPKNLKLLAVPLFELYDNVQ              IW  Y N  +    + VQ+D+ + L
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKL

OMO97865.1 hypothetical protein COLO4_14301 [Corchorus olitorius]7.3e-9466.55Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRT--------SFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKLQ
        SE+EYFAVPKNLKLLAVPLFELYDNVQ  +         S        EIW  +IN  +A   + +QHD+ M L+
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRT--------SFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKLQ

TXG70886.1 hypothetical protein EZV62_005821 [Acer yangbiense]4.3e-9468.56Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANS AL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHM
        SEREYFAVPKNLKLLAVPLFELYDNVQ+         + +EIWT +IN  +  + + VQHD+++
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHM

TrEMBL top hitse value%identityAlignment
A0A067F1N4 Cleavage and polyadenylation specificity factor subunit 5 (Fragment)5.1e-9367.67Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKL
        SEREYFAVPKNLKLLAVPLFELYDNVQ              IW  Y N  +    + VQ+D+ + L
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKL

A0A1R3JSN5 Cleavage and polyadenylation specificity factor subunit 53.5e-9466.55Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRT--------SFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKLQ
        SE+EYFAVPKNLKLLAVPLFELYDNVQ  +         S        EIW  +IN  +A   + +QHD+ M L+
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRT--------SFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKLQ

A0A2H5NMB3 Cleavage and polyadenylation specificity factor subunit 53.2e-9567.39Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQ--------LLRTSFLF--SHSTAEIWTCYINDPAAVIPVSVQHDHHMKL
        SEREYFAVPKNLKLLAVPLFELYDNVQ        LL   FL+  ++  AEIW  Y N  +    + VQ+D+ + L
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQ--------LLRTSFLF--SHSTAEIWTCYINDPAAVIPVSVQHDHHMKL

A0A5C7IQY5 Pre-mRNA cleavage factor Im 25 kDa subunit2.1e-9468.56Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANS AL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHM
        SEREYFAVPKNLKLLAVPLFELYDNVQ+         + +EIWT +IN  +  + + VQHD+++
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHM

A0A6A4LQH0 Cleavage and polyadenylation specificity factor subunit 5 (Fragment)1.9e-9267.55Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGL+RKL+SKLGANSP+LQP+WQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMK
        SEREYFAVPKNLKLLAVPLFELYDNVQ+    +   +   EIW  YIN+  A   V  Q+D  +K
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMK

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 51.0e-5048.4Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                  V
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV

Query:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF
         EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  F
Subjt:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF

Query:  AVPKNLKLLAVPLFELYDN
        AVPKN KL+A PLFELYDN
Subjt:  AVPKNLKLLAVPLFELYDN

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 51.0e-5048.4Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                  V
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV

Query:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF
         EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  F
Subjt:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF

Query:  AVPKNLKLLAVPLFELYDN
        AVPKN KL+A PLFELYDN
Subjt:  AVPKNLKLLAVPLFELYDN

Q5RAI8 Cleavage and polyadenylation specificity factor subunit 51.0e-5048.4Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                  V
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV

Query:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF
         EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  F
Subjt:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF

Query:  AVPKNLKLLAVPLFELYDN
        AVPKN KL+A PLFELYDN
Subjt:  AVPKNLKLLAVPLFELYDN

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 22.4e-8469.16Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQ
        SE+EYFAVPKNLKLLAVPLFELYDNVQ
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQ

Q9CQF3 Cleavage and polyadenylation specificity factor subunit 51.0e-5048.4Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                  V
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREV

Query:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF
         EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  F
Subjt:  QEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYF

Query:  AVPKNLKLLAVPLFELYDN
        AVPKN KL+A PLFELYDN
Subjt:  AVPKNLKLLAVPLFELYDN

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit1.7e-8569.16Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENM

Query:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL
             VQEH HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHL
Subjt:  GSIREVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHL

Query:  SEREYFAVPKNLKLLAVPLFELYDNVQ
        SE+EYFAVPKNLKLLAVPLFELYDNVQ
Subjt:  SEREYFAVPKNLKLLAVPLFELYDNVQ

AT4G29820.1 homolog of CFIM-257.6e-4945Show/hide
Query:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIRE
        +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LL                                                  
Subjt:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIRE

Query:  VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREY
        V+  KHPH+LLLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFET+MYP+ PP+I  PKEC KLF+V L   + 
Subjt:  VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREY

Query:  FAVPKNLKLLAVPLFELYDN
        F VPKN KLLAVPL +L++N
Subjt:  FAVPKNLKLLAVPLFELYDN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGCACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGCAT
GAAAGTCAACTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGAATCTGAGTAAGGTGTTGGAGCAGTTAAAGTCGGCATTAATGTGGATTATTTGCG
GCTATCTCAGTCATGCATCAGACCCTTTACAGGGATGGAGAATGACTTGGACTTCAACTCCTTGTGAGCTAGAAAATATGGGCTCAATCAGGGAGGTGCAAGAACATAAG
CATCCCCATATTCTACTTCTGCAAATCGGAAATACCTTTTGCAAGCTCCCTGGGGGCCGGTTGAAGCCAGGAGAAAATGAGATTGAAGGTTTAAAGAGGAAACTGACAAG
CAAACTGGGTGCAAATTCACCTGCCCTCCAACCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGTCCTC
CTCATATTACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCATTTGTCTGAAAGAGAGTACTTCGCGGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTT
GAGCTCTATGACAATGTTCAGCTACTAAGAACTAGTTTTCTGTTTTCGCACTCGACCGCAGAGATATGGACCTGTTATATCAACGATCCCGCAGCAGTTATCCCGGTTTC
AGTTCAACATGATCACCACATGAAATTGCAAGACGGGAACTCGAAATTTGTAGCAGGCAGACTCCAATTTGCAGCAGTGGATAATTCTTATTGGCTTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGCACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGCAT
GAAAGTCAACTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGAATCTGAGTAAGGTGTTGGAGCAGTTAAAGTCGGCATTAATGTGGATTATTTGCG
GCTATCTCAGTCATGCATCAGACCCTTTACAGGGATGGAGAATGACTTGGACTTCAACTCCTTGTGAGCTAGAAAATATGGGCTCAATCAGGGAGGTGCAAGAACATAAG
CATCCCCATATTCTACTTCTGCAAATCGGAAATACCTTTTGCAAGCTCCCTGGGGGCCGGTTGAAGCCAGGAGAAAATGAGATTGAAGGTTTAAAGAGGAAACTGACAAG
CAAACTGGGTGCAAATTCACCTGCCCTCCAACCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGTCCTC
CTCATATTACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCATTTGTCTGAAAGAGAGTACTTCGCGGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTT
GAGCTCTATGACAATGTTCAGCTACTAAGAACTAGTTTTCTGTTTTCGCACTCGACCGCAGAGATATGGACCTGTTATATCAACGATCCCGCAGCAGTTATCCCGGTTTC
AGTTCAACATGATCACCACATGAAATTGCAAGACGGGAACTCGAAATTTGTAGCAGGCAGACTCCAATTTGCAGCAGTGGATAATTCTTATTGGCTTAGTTAG
Protein sequenceShow/hide protein sequence
MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLNLSKVLEQLKSALMWIICGYLSHASDPLQGWRMTWTSTPCELENMGSIREVQEHK
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLF
ELYDNVQLLRTSFLFSHSTAEIWTCYINDPAAVIPVSVQHDHHMKLQDGNSKFVAGRLQFAAVDNSYWLS