; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031907 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031907
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:38804131..38809129
RNA-Seq ExpressionSpg031907
SyntenySpg031907
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAM01179.2 Putative retroelement [Oryza sativa Japonica Group]2.7e-1237.9Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL
        V+ L+D + SW  D I Q+F+P DA  ILNI    +   D I W PDK GRF+V+SAYHLA  L      S S  + +S  W ++W  +  P+    +  
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL

Query:  FYPEDPKFSFVLQERSSTDRNVEL
            DPK    L E+S  +  V L
Subjt:  FYPEDPKFSFVLQERSSTDRNVEL

ABB46931.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]2.7e-1237.9Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL
        V+ L+D + SW  D I Q+F+P DA  ILNI    +   D I W PDK GRF+V+SAYHLA  L      S S  + +S  W ++W  +  P+    +  
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL

Query:  FYPEDPKFSFVLQERSSTDRNVEL
            DPK    L E+S  +  V L
Subjt:  FYPEDPKFSFVLQERSSTDRNVEL

KAG6628833.1 hypothetical protein CIPAW_14G039600 [Carya illinoinensis]2.9e-1134.18Show/hide
Query:  SKVNTLLD-DNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGD
        +KV+ L+D  N  WK D I ++F   DA  I  +P      +D++ W P K GRF+VKSAY L K+    +    S + K   MWK IWN+DV    +G 
Subjt:  SKVNTLLD-DNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGD

Query:  VDLFYPEDPKFSFVLQERSSTDRNVELDEAINLCQRRGTTRVRLHGNHQKASQ-WKMN
        V LF  +  +    ++E     R V       +C+RR  T V +      AS  W M+
Subjt:  VDLFYPEDPKFSFVLQERSSTDRNVELDEAINLCQRRGTTRVRLHGNHQKASQ-WKMN

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]1.3e-1132.37Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL
        V+ L+D+++ W++D IR++F  +DA  IL IP   + S D++ W  DKKG ++VKS Y LA  +      S S   KSS  W SIW + +  + K     
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL

Query:  FYPEDPKFSFVLQERSSTDRNVELDEAINLCQRRGTTRVRL----HGNHQKASQWKMNVDAAWYEKEGREGIG
           ED + S      +  +  V+  + I + Q +  +   L    H N   A  +K+NVDAA      R G+G
Subjt:  FYPEDPKFSFVLQERSSTDRNVELDEAINLCQRRGTTRVRL----HGNHQKASQWKMNVDAAWYEKEGREGIG

XP_023876230.1 uncharacterized protein LOC111988681 [Quercus suber]2.9e-1137.86Show/hide
Query:  NIKGSKVNTLLDDNN-SWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQ-VASQSDRSKSSVMWKSIWNMDVLP
        +++G KV  L+D N   WKE  IRQ F+PQDA  IL+I       +D + W  +K G+FTV+S Y LA+D++  + +   S+ +    +W+ +WNM+V  
Subjt:  NIKGSKVNTLLDDNN-SWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQ-VASQSDRSKSSVMWKSIWNMDVLP

Query:  RTK
        + K
Subjt:  RTK

TrEMBL top hitse value%identityAlignment
B8AFP4 Reverse transcriptase domain-containing protein4.1e-1140Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTK
        V+ L+D + SW  D I Q+F+P DA  ILNI    +   D I W PD+ GRF+V+SAYHLA  L      S S  + +S  W ++W  +   + K
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTK

B8B9K5 zf-RVT domain-containing protein2.1e-1038.95Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTK
        V+ L+D + SW  D I  +F+P D   ILNI    +  +D I W PD+ GRF+V+SAYHLA  L      S S  + SS  W ++W  +   + K
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTK

Q10AZ1 Uncharacterized protein1.2e-1038.1Show/hide
Query:  FDWDNIKGSKVNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDV
        F  + IK   ++ LLD N +W  D I + F+P D   I +I    +   D I W PDK G F+V+SAY LA D +  +V+S S     S +WK +W  DV
Subjt:  FDWDNIKGSKVNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDV

Query:  LPRTK
          + K
Subjt:  LPRTK

Q33AJ4 Retrotransposon protein, putative, unclassified1.3e-1237.9Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL
        V+ L+D + SW  D I Q+F+P DA  ILNI    +   D I W PDK GRF+V+SAYHLA  L      S S  + +S  W ++W  +  P+    +  
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL

Query:  FYPEDPKFSFVLQERSSTDRNVEL
            DPK    L E+S  +  V L
Subjt:  FYPEDPKFSFVLQERSSTDRNVEL

Q8S5K1 Putative retroelement1.3e-1237.9Show/hide
Query:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL
        V+ L+D + SW  D I Q+F+P DA  ILNI    +   D I W PDK GRF+V+SAYHLA  L      S S  + +S  W ++W  +  P+    +  
Subjt:  VNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTKGDVDL

Query:  FYPEDPKFSFVLQERSSTDRNVEL
            DPK    L E+S  +  V L
Subjt:  FYPEDPKFSFVLQERSSTDRNVEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)7.5e-0539.39Show/hide
Query:  VNTLLDDN-NSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLN
        VN L+D N N WK D ++    P D   IL I        D  +W   K G +TVKS Y +A+DL+
Subjt:  VNTLLDDN-NSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCTGGAAGAGTTCGATTGGGACAATATCAAGGGCTCTAAAGTTAACACTCTTCTGGATGACAACAACTCATGGAAGGAAGACTACATCCGCCAAAATTTTATCCC
TCAAGACGCGGGAGACATTCTGAATATACCAACAGGGGACAAAAGCTCTAAAGACGAGATAACATGGATGCCGGACAAGAAAGGAAGATTCACAGTGAAAAGCGCTTATC
ACCTGGCAAAAGACCTCAACGATTGTCAAGTAGCTTCTCAATCTGATAGAAGCAAATCTTCTGTGATGTGGAAAAGCATATGGAACATGGATGTATTGCCTAGAACAAAA
GGTGATGTGGATTTATTTTATCCCGAAGATCCTAAATTCTCCTTCGTTTTGCAAGAAAGATCGAGTACCGACAGAAATGTGGAGCTGGATGAAGCCATCAATCTGTGCCA
ACGTCGAGGAACCACGCGAGTCAGGCTACATGGAAACCACCAAAAGGCGAGTCAGTGGAAGATGAATGTTGATGCTGCCTGGTATGAGAAAGAAGGGCGCGAAGGGATCG
GGTGGAGTGGTTATTGGTACCTGCAAAGAAAGGAGCATCCCGTTAGCTGTAGAATCGGATGCCTTGGAAGTCATCAACTGCTGAAAGACGAGGAAGTGGACTTTTCGGAT
GTGAAAACCATTGTCGACTCCATAAAGGCCGCAATTCCAATCGATCAAGCAGTCGAATTTCTCCATTGTAACCGTCTTTTGAACACAGTAGCGCACTGTGTTGCCAAGGA
GGCTTTCAAGAAAGTGATCGATGTTGAAGAATCCGATAAAGTAGATAAGTGCTTGAATAATGTTGGAGAATCTTTGACTATTGCAAAAGATAATGCATACAACTTTGCAA
TAGTCCTATATACTTTAAGAGTTGGCAGCATGATGTGGCTTGATTATTTTGATATGAAATTTGATTCATTTTCCTCCTTACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACCTGGAAGAGTTCGATTGGGACAATATCAAGGGCTCTAAAGTTAACACTCTTCTGGATGACAACAACTCATGGAAGGAAGACTACATCCGCCAAAATTTTATCCC
TCAAGACGCGGGAGACATTCTGAATATACCAACAGGGGACAAAAGCTCTAAAGACGAGATAACATGGATGCCGGACAAGAAAGGAAGATTCACAGTGAAAAGCGCTTATC
ACCTGGCAAAAGACCTCAACGATTGTCAAGTAGCTTCTCAATCTGATAGAAGCAAATCTTCTGTGATGTGGAAAAGCATATGGAACATGGATGTATTGCCTAGAACAAAA
GGTGATGTGGATTTATTTTATCCCGAAGATCCTAAATTCTCCTTCGTTTTGCAAGAAAGATCGAGTACCGACAGAAATGTGGAGCTGGATGAAGCCATCAATCTGTGCCA
ACGTCGAGGAACCACGCGAGTCAGGCTACATGGAAACCACCAAAAGGCGAGTCAGTGGAAGATGAATGTTGATGCTGCCTGGTATGAGAAAGAAGGGCGCGAAGGGATCG
GGTGGAGTGGTTATTGGTACCTGCAAAGAAAGGAGCATCCCGTTAGCTGTAGAATCGGATGCCTTGGAAGTCATCAACTGCTGAAAGACGAGGAAGTGGACTTTTCGGAT
GTGAAAACCATTGTCGACTCCATAAAGGCCGCAATTCCAATCGATCAAGCAGTCGAATTTCTCCATTGTAACCGTCTTTTGAACACAGTAGCGCACTGTGTTGCCAAGGA
GGCTTTCAAGAAAGTGATCGATGTTGAAGAATCCGATAAAGTAGATAAGTGCTTGAATAATGTTGGAGAATCTTTGACTATTGCAAAAGATAATGCATACAACTTTGCAA
TAGTCCTATATACTTTAAGAGTTGGCAGCATGATGTGGCTTGATTATTTTGATATGAAATTTGATTCATTTTCCTCCTTACATTAG
Protein sequenceShow/hide protein sequence
MNLEEFDWDNIKGSKVNTLLDDNNSWKEDYIRQNFIPQDAGDILNIPTGDKSSKDEITWMPDKKGRFTVKSAYHLAKDLNDCQVASQSDRSKSSVMWKSIWNMDVLPRTK
GDVDLFYPEDPKFSFVLQERSSTDRNVELDEAINLCQRRGTTRVRLHGNHQKASQWKMNVDAAWYEKEGREGIGWSGYWYLQRKEHPVSCRIGCLGSHQLLKDEEVDFSD
VKTIVDSIKAAIPIDQAVEFLHCNRLLNTVAHCVAKEAFKKVIDVEESDKVDKCLNNVGESLTIAKDNAYNFAIVLYTLRVGSMMWLDYFDMKFDSFSSLH