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Spg031923 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031923
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:42259128..42261430
RNA-Seq ExpressionSpg031923
SyntenySpg031923
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]2.3e-0836.79Show/hide
Query:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE
        K+NCDA W   ++ GGVGWVVRDS G +V AG K   R GS   ++++AI E L+    SG       + L VE D + +I+++ GE      +  ++ +
Subjt:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE

Query:  VKGPAG
        +K   G
Subjt:  VKGPAG

CAB4279811.1 unnamed protein product [Prunus armeniaca]3.0e-1140.18Show/hide
Query:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE
        K+NCDA W   ++ GGVGWVVRDS G +V AGCK   R GS   +++KAI E L+    SG       + L VE D + LI++L GE      +  ++ +
Subjt:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE

Query:  VKGPAGSCPFAH
        +K     C F H
Subjt:  VKGPAGSCPFAH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.0e-0834.95Show/hide
Query:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVLI
        WK+N +A W   + TGG+GW++RD  G ++ A C+ I  + +I  L+  AI EGL       RA+ +     + +E D ++ I LL+ + +D++EI  L+
Subjt:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVLI

Query:  EEV
        EE+
Subjt:  EEV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.6e-1231.58Show/hide
Query:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIE
        W +N DA+W +S+  GG+GW++R   G +V+AG + ++   ++K+L++ AI+EGL +LT  G     +   L +E D  ++  LLN + ED ++   ++E
Subjt:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIE

Query:  EVKGPAGSCPFAHGQSGGALSVGCRRSTSPAES
        E+     SC        G  + GC  S +   S
Subjt:  EVKGPAGSCPFAHGQSGGALSVGCRRSTSPAES

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.0e-0834.62Show/hide
Query:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSG-RAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVL
        WK+N DA W   + TGG+GW++RD  G ++ A C+ I  + +I  L+  AI EGL  +     R + +     + +E D ++ I LL+ + +D++EI  L
Subjt:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSG-RAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVL

Query:  IEEV
        +EE+
Subjt:  IEEV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.9e-0834.95Show/hide
Query:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVLI
        WK+N +A W   + TGG+GW++RD  G ++ A C+ I  + +I  L+  AI EGL       RA+ +     + +E D ++ I LL+ + +D++EI  L+
Subjt:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVLI

Query:  EEV
        EE+
Subjt:  EEV

A0A6J1DNV9 uncharacterized protein LOC1110224032.2e-1231.58Show/hide
Query:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIE
        W +N DA+W +S+  GG+GW++R   G +V+AG + ++   ++K+L++ AI+EGL +LT  G     +   L +E D  ++  LLN + ED ++   ++E
Subjt:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIE

Query:  EVKGPAGSCPFAHGQSGGALSVGCRRSTSPAES
        E+     SC        G  + GC  S +   S
Subjt:  EVKGPAGSCPFAHGQSGGALSVGCRRSTSPAES

A0A6J1DSV1 uncharacterized protein LOC1110236081.9e-0834.62Show/hide
Query:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSG-RAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVL
        WK+N DA W   + TGG+GW++RD  G ++ A C+ I  + +I  L+  AI EGL  +     R + +     + +E D ++ I LL+ + +D++EI  L
Subjt:  WKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSG-RAVGRLP-NSLIVELDCVDLIKLLNGEAEDRSEISVL

Query:  IEEV
        +EE+
Subjt:  IEEV

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.1e-0836.79Show/hide
Query:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE
        K+NCDA W   ++ GGVGWVVRDS G +V AG K   R GS   ++++AI E L+    SG       + L VE D + +I+++ GE      +  ++ +
Subjt:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE

Query:  VKGPAG
        +K   G
Subjt:  VKGPAG

A0A6J5UV01 Reverse transcriptase domain-containing protein1.4e-1140.18Show/hide
Query:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE
        K+NCDA W   ++ GGVGWVVRDS G +V AGCK   R GS   +++KAI E L+    SG       + L VE D + LI++L GE      +  ++ +
Subjt:  KINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEE

Query:  VKGPAGSCPFAH
        +K     C F H
Subjt:  VKGPAGSCPFAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATCTAAAATTATGCTGGAAGATCAACTGTGATGCAACGTGGTTTGAGTCTTCAAGGACTGGGGGAGTAGGTTGGGTTGTTCGTGACTCAGCTGGTTCTCTTGTCGTAGC
AGGCTGTAAGAAAATCGATAGAAAGGGGAGTATCAAAATCCTCAAATCAAAGGCGATTATTGAAGGGCTGATGCATCTCACCGGCTCTGGTCGTGCAGTTGGTAGGCTCC
CAAATTCTCTTATCGTGGAGTTGGACTGTGTTGATTTAATCAAACTTCTAAACGGAGAAGCAGAAGATCGGTCGGAGATTTCCGTGCTAATTGAAGAGGTTAAGGGCCCA
GCGGGCAGCTGCCCTTTTGCCCACGGGCAGAGTGGTGGTGCTCTGTCAGTGGGCTGTCGGCGTTCAACATCACCGGCTGAAAGCGACGTCGTGTGGGCGTGCGGGGTTTT
TGAGGTAGCCGTCGGATTGGCGTTATTGGGGAACAGCTGGGGGCTGAAAAGGAGGCTCTCGTATCGGTGTGTTTGTGCTGATATTGCAATTGAAAAAGATGAGATAAACG
AGAAACAAGTGGATAGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
TATCTAAAATTATGCTGGAAGATCAACTGTGATGCAACGTGGTTTGAGTCTTCAAGGACTGGGGGAGTAGGTTGGGTTGTTCGTGACTCAGCTGGTTCTCTTGTCGTAGC
AGGCTGTAAGAAAATCGATAGAAAGGGGAGTATCAAAATCCTCAAATCAAAGGCGATTATTGAAGGGCTGATGCATCTCACCGGCTCTGGTCGTGCAGTTGGTAGGCTCC
CAAATTCTCTTATCGTGGAGTTGGACTGTGTTGATTTAATCAAACTTCTAAACGGAGAAGCAGAAGATCGGTCGGAGATTTCCGTGCTAATTGAAGAGGTTAAGGGCCCA
GCGGGCAGCTGCCCTTTTGCCCACGGGCAGAGTGGTGGTGCTCTGTCAGTGGGCTGTCGGCGTTCAACATCACCGGCTGAAAGCGACGTCGTGTGGGCGTGCGGGGTTTT
TGAGGTAGCCGTCGGATTGGCGTTATTGGGGAACAGCTGGGGGCTGAAAAGGAGGCTCTCGTATCGGTGTGTTTGTGCTGATATTGCAATTGAAAAAGATGAGATAAACG
AGAAACAAGTGGATAGAGGTTGA
Protein sequenceShow/hide protein sequence
YLKLCWKINCDATWFESSRTGGVGWVVRDSAGSLVVAGCKKIDRKGSIKILKSKAIIEGLMHLTGSGRAVGRLPNSLIVELDCVDLIKLLNGEAEDRSEISVLIEEVKGP
AGSCPFAHGQSGGALSVGCRRSTSPAESDVVWACGVFEVAVGLALLGNSWGLKRRLSYRCVCADIAIEKDEINEKQVDRG