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Spg031925 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031925
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionER membrane protein complex subunit 6
Genome locationscaffold11:36879806..36884389
RNA-Seq ExpressionSpg031925
SyntenySpg031925
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0072546 - ER membrane protein complex (cellular component)
InterPro domainsIPR008504 - ER membrane protein complex subunit 6
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597582.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4981.69Show/hide
Query:  SAAASSRFVEQSVALLPSNRSQSTDHTPAEAMAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMA
        +AAA  R   QS+  LP +RSQSTD TP EAMAGYSS AS+KKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMA
Subjt:  SAAASSRFVEQSVALLPSNRSQSTDHTPAEAMAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMA

Query:  ITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYF
        ITSIGLAAKAGFSFHSYFESW QILLDGFLSGLM  +L   F
Subjt:  ITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYF

KAG7029026.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-5485.42Show/hide
Query:  SAAASSRFVEQSVALLPSNRSQSTDHTPAEAMAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMA
        +AAA  R   QS+  LP +RSQSTD TP EAMAGYSS AS+KKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMA
Subjt:  SAAASSRFVEQSVALLPSNRSQSTDHTPAEAMAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMA

Query:  ITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFLD
        ITSIGLAAKAGFSFHSYFESW QILLDGFLSGLMVCIL SYFLD
Subjt:  ITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFLD

XP_022137968.1 ER membrane protein complex subunit 6 [Momordica charantia]9.0e-4387.39Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSS AS+KKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITS+GLAAKAGFSFHSYFESW QILLDGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

XP_022937062.1 ER membrane protein complex subunit 6 [Cucurbita moschata]9.0e-4388.29Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSS AS+KKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITSIGLAAKAGFSFHSYFESW QILLDGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

XP_022972030.1 ER membrane protein complex subunit 6 [Cucurbita maxima]5.3e-4389.19Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSS AS+KKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITSIGLAAKAGFSFHSYFESW QILLDGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

TrEMBL top hitse value%identityAlignment
A0A0A0LZ06 ER membrane protein complex subunit 61.3e-4289.72Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSSTASDKKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTGFIFYFLVMAITS+ LAAKAGFSFHSYFES  QIL DGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL

A0A1S3BQB0 ER membrane protein complex subunit 67.5e-4388.29Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSSTASDKKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITS+ LAAKAGFSFHSYFES  QILLDGFL 
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

A0A6J1CBS9 ER membrane protein complex subunit 64.4e-4387.39Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSS AS+KKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITS+GLAAKAGFSFHSYFESW QILLDGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

A0A6J1FFH8 ER membrane protein complex subunit 64.4e-4388.29Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSS AS+KKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITSIGLAAKAGFSFHSYFESW QILLDGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

A0A6J1I7D9 ER membrane protein complex subunit 62.6e-4389.19Show/hide
Query:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS
        MAGYSS AS+KKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITSIGLAAKAGFSFHSYFESW QILLDGFLS
Subjt:  MAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLS

Query:  GLMVCILLSYF
        GLM  +L   F
Subjt:  GLMVCILLSYF

SwissProt top hitse value%identityAlignment
Q3ZCG8 ER membrane protein complex subunit 61.7e-0736.96Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + S+ L  KA   ++ YF+S   +   G + GL   +L   FL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL

Q68EU8 ER membrane protein complex subunit 61.7e-0738.82Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + S+ L  K+G  ++ YF+S   +   G + GL   +L   FL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL

Q6GLC5 ER membrane protein complex subunit 61.3e-0738.82Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + S+ L  K+G  ++ YF+S   +   G + GL   +L   FL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL

Q9BV81 ER membrane protein complex subunit 61.5e-0838.04Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + S+ L  KAG  ++ YF+S   +   G + GL   +L   FL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL

Q9CQW0 ER membrane protein complex subunit 61.5e-0838.04Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + S+ L  KAG  ++ YF+S   +   G + GL   +L   FL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFL

Arabidopsis top hitse value%identityAlignment
AT5G49540.1 Rab5-interacting family protein1.9e-3063.46Show/hide
Query:  ASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCIL
        +S+K+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+VM ITS+GL AKAGFS   YF+SW ++L DGFL GLM  +L
Subjt:  ASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCIL

Query:  LSYF
           F
Subjt:  LSYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAACTGGGGGCTCAACTCAACTACAAGATTCAGCTGCCGCTTCGTCGAGGTTTGTAGAACAAAGCGTTGCCCTGCTCCCCTCAAATCGATCACAATCAACTGATCATAC
ACCAGCAGAAGCTATGGCTGGATATTCCTCCACTGCTTCTGACAAGAAATCGTCTGACGCGGCCGACGATTTGCCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGA
AGATTATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACAGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCA
ATTACTTCAATTGGACTTGCAGCCAAGGCTGGATTCTCCTTTCATTCATATTTCGAAAGCTGGACCCAGATTCTACTTGATGGCTTTCTGAGTGGTCTCATGGTATGCAT
CCTCCTCTCTTATTTCTTAGATTAG
mRNA sequenceShow/hide mRNA sequence
CCAACTGGGGGCTCAACTCAACTACAAGATTCAGCTGCCGCTTCGTCGAGGTTTGTAGAACAAAGCGTTGCCCTGCTCCCCTCAAATCGATCACAATCAACTGATCATAC
ACCAGCAGAAGCTATGGCTGGATATTCCTCCACTGCTTCTGACAAGAAATCGTCTGACGCGGCCGACGATTTGCCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGA
AGATTATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACAGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCA
ATTACTTCAATTGGACTTGCAGCCAAGGCTGGATTCTCCTTTCATTCATATTTCGAAAGCTGGACCCAGATTCTACTTGATGGCTTTCTGAGTGGTCTCATGGTATGCAT
CCTCCTCTCTTATTTCTTAGATTAG
Protein sequenceShow/hide protein sequence
PTGGSTQLQDSAAASSRFVEQSVALLPSNRSQSTDHTPAEAMAGYSSTASDKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMA
ITSIGLAAKAGFSFHSYFESWTQILLDGFLSGLMVCILLSYFLD