CuGenDBv2

Gene ID	Spg031933
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein RDM1-like
Genome location	scaffold11:39499361..39500039
RNA-Seq Expression	Spg031933
Synteny	Spg031933
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-90

91.95

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGG NDGFEFKPSIDDFKIP KEMTSEGMLIKRAEMYQEYM+Q+P+PAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

2.2e-90

91.95

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGG NDGFEFKPSIDDFKIP KEMTSEGMLIKRAEMYQEYM+Q+P+PAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_022974457.1 protein RDM1-like [Cucurbita maxima]

1.7e-90

91.95

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGG NDGFEFKPSIDDFKIP KEMTSE MLIKRAEMYQEYM+Q+P+PA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

1.0e-90

91.95

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGG NDGFEFKPSIDDFKIP KEMTS+GMLIKRAEMYQEYM+Q+P+PAHRGSVIPFTTWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_038877941.1 protein RDM1 [Benincasa hispida]

1.7e-90

92.53

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G  NDGFEFKPS+DDFKIP KEMTSEGMLIKRAEMYQEYM+Q+ +PA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AWI8 protein RDM1

3.5e-89

90.8

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE    NDG+EFKPS+DDFKIP KEMTSEGML+KRAEMYQEYM+Q+ +PA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GSADEYKPLDTVIHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A6J1GHM4 protein RDM1-like

1.1e-90

91.95

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGG NDGFEFKPSIDDFKIP KEMTSEGMLIKRAEMYQEYM+Q+P+PAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A6J1GV10 protein RDM1

2.4e-90

91.95

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G  NDGFEFKPS+DDFKIP KEMT+EGMLIKRAEMYQEYM+Q+ +PA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A6J1IGA1 protein RDM1-like

8.3e-91

91.95

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGG NDGFEFKPSIDDFKIP KEMTSE MLIKRAEMYQEYM+Q+P+PA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

1.9e-90

91.95

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G  NDGFEFKPS+DDFKIP KEMT+EGMLIKRAEMYQEYM+Q+ +PA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGS DEYKPLDTVIHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

1.7e-48

55.7

Show/hide

Query:  SGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YM+QVP+P +RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

1.2e-49

55.7

Show/hide

Query:  SGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YM+QVP+P +RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Sequences

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CDS sequence

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ATGAAGAGGCCAATGCCTTGGAACGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCGGAAATAGGAGGACATAATGATGGATTTGAGTTCAAGCC
TTCCATTGACGATTTCAAAATTCCTCCTAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAGACAGGTCCCAGTCCCAGCAC
ACCGTGGTTCTGTAATACCATTTACAACTTGGATGGGACTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTAAAACAGTGG
GATCAATTAAGGTTCGGAAGTGCAGATGAATATAAGCCATTGGATACCGTAATTCATCCAAGTAAAGCTGAAGCAACCATATGGATGGTTGAAGAGATTCATAGGCGCAC
CTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

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Protein sequence

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MKRPMPWNEQVDVISSGESSSSDSEIGGHNDGFEFKPSIDDFKIPPKEMTSEGMLIKRAEMYQEYMRQVPVPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW
DQLRFGSADEYKPLDTVIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

Spg031933 (gene) of Sponge gourd (cylindrica) v1 genome