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Spg032000 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032000
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:41112912..41113838
RNA-Seq ExpressionSpg032000
SyntenySpg032000
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]1.0e-0437.65Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA-------NNLKISNSSTIIDRQVG
        PP   LK+N DA+W S    GGVGWVVRDS+G ++ AGGK          +E   I+E L        + L++ + S  + R +G
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA-------NNLKISNSSTIIDRQVG

CAB4303756.1 unnamed protein product [Prunus armeniaca]3.0e-0433.61Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLAN--NLKISNSSTIIDRQVGRAKTEG---VDPK-RAEFFW
        PP   LK+N DA+W + +  GGVGWV+RDS G L+ AGG+         ++EL+ I+  L+   N  +++     D Q G     G   VD       F 
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLAN--NLKISNSSTIIDRQVGRAKTEG---VDPK-RAEFFW

Query:  LRSVPTASSRPDFAWFVPK
        +R +  + SR  F  F P+
Subjt:  LRSVPTASSRPDFAWFVPK

CAB4313148.1 unnamed protein product [Prunus armeniaca]1.7e-0436.05Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA--NNLKISNSSTIIDRQVGRAKTEG
        PP   LK+N DA+W + +  GGVGWV+RDS G L+ AGG+         ++EL+ I+  L+  ++  ++N     D Q+G +   G
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA--NNLKISNSSTIIDRQVGRAKTEG

KAA0038679.1 hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa]8.6e-0442.59Show/hide
Query:  KLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL
        + N+DASW+  ++  G  WVVRDS G+ I+A  +  + +W MEVLE +    GL
Subjt:  KLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.1e-0543.33Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL
        PP    KLN DASW   ++ GG+GW++ D  G +++AG   I+E+  +  LEL+TI  GL
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL

TrEMBL top hitse value%identityAlignment
A0A5D3E6P6 RNase H domain-containing protein4.2e-0442.59Show/hide
Query:  KLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL
        + N+DASW+  ++  G  WVVRDS G+ I+A  +  + +W MEVLE +    GL
Subjt:  KLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL

A0A6J1CQG0 uncharacterized protein LOC1110132161.0e-0543.33Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL
        PP    KLN DASW   ++ GG+GW++ D  G +++AG   I+E+  +  LEL+TI  GL
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGL

A0A6J5UAY2 Reverse transcriptase domain-containing protein4.9e-0537.65Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA-------NNLKISNSSTIIDRQVG
        PP   LK+N DA+W S    GGVGWVVRDS+G ++ AGGK          +E   I+E L        + L++ + S  + R +G
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA-------NNLKISNSSTIIDRQVG

A0A6J5WPU6 Reverse transcriptase domain-containing protein1.4e-0433.61Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLAN--NLKISNSSTIIDRQVGRAKTEG---VDPK-RAEFFW
        PP   LK+N DA+W + +  GGVGWV+RDS G L+ AGG+         ++EL+ I+  L+   N  +++     D Q G     G   VD       F 
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLAN--NLKISNSSTIIDRQVGRAKTEG---VDPK-RAEFFW

Query:  LRSVPTASSRPDFAWFVPK
        +R +  + SR  F  F P+
Subjt:  LRSVPTASSRPDFAWFVPK

A0A6J5XPQ2 RNase H domain-containing protein8.4e-0536.05Show/hide
Query:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA--NNLKISNSSTIIDRQVGRAKTEG
        PP   LK+N DA+W + +  GGVGWV+RDS G L+ AGG+         ++EL+ I+  L+  ++  ++N     D Q+G +   G
Subjt:  PPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLA--NNLKISNSSTIIDRQVGRAKTEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCCCCCAAGCCGCGTCTGAAACTAAATGTTGATGCTTCATGGGATAGCTCGAAAGATTTTGGAGGAGTTGGTTGGGTAGTTCGTGACTCCGAGGGATCTCTGAT
CATCGCCGGTGGGAAAGCAATCAAAGAAAGATGGTTAATGGAAGTTCTGGAATTGATAACAATTAAGGAAGGGTTGGCAAATAACCTGAAAATCAGCAATAGCTCAACGA
TAATTGACCGACAAGTAGGACGGGCCAAGACCGAAGGGGTCGACCCCAAGCGGGCTGAGTTCTTCTGGCTCCGTTCGGTCCCTACCGCCTCTAGCCGCCCCGATTTCGCC
TGGTTTGTCCCGAAACACCTCCGAAATCCTAAAATCCCTAGGAGCATGAGCAGCATCGGATGCGGTGTGACTAGCACCACACCGGTGTGCAGGTTTACCATTTTGCAGGC
CACGTCTTCTTCCCTCATAAACAAATTTAACGTTGGTGGCACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCCCCCAAGCCGCGTCTGAAACTAAATGTTGATGCTTCATGGGATAGCTCGAAAGATTTTGGAGGAGTTGGTTGGGTAGTTCGTGACTCCGAGGGATCTCTGAT
CATCGCCGGTGGGAAAGCAATCAAAGAAAGATGGTTAATGGAAGTTCTGGAATTGATAACAATTAAGGAAGGGTTGGCAAATAACCTGAAAATCAGCAATAGCTCAACGA
TAATTGACCGACAAGTAGGACGGGCCAAGACCGAAGGGGTCGACCCCAAGCGGGCTGAGTTCTTCTGGCTCCGTTCGGTCCCTACCGCCTCTAGCCGCCCCGATTTCGCC
TGGTTTGTCCCGAAACACCTCCGAAATCCTAAAATCCCTAGGAGCATGAGCAGCATCGGATGCGGTGTGACTAGCACCACACCGGTGTGCAGGTTTACCATTTTGCAGGC
CACGTCTTCTTCCCTCATAAACAAATTTAACGTTGGTGGCACGTGA
Protein sequenceShow/hide protein sequence
MDPPKPRLKLNVDASWDSSKDFGGVGWVVRDSEGSLIIAGGKAIKERWLMEVLELITIKEGLANNLKISNSSTIIDRQVGRAKTEGVDPKRAEFFWLRSVPTASSRPDFA
WFVPKHLRNPKIPRSMSSIGCGVTSTTPVCRFTILQATSSSLINKFNVGGT