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Spg032102 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032102
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold11:37483721..37491854
RNA-Seq ExpressionSpg032102
SyntenySpg032102
Gene Ontology termsNA
InterPro domainsIPR023393 - START-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1240Show/hide
Query:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF
        H+ I C IA + W+S+  H +S V+  S       C      K  +++++I+ +  A+ LW++W+ERN+RIF    ++ A++WE I A A  W S S LF
Subjt:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF

Query:  ANYDASSIALNWKAF
        +NY ASSIALN  AF
Subjt:  ANYDASSIALNWKAF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-1236.36Show/hide
Query:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS
        E ++H+ IHC  +   W   Q+L   +      +++A N C         +Q+ +I  +  A +LW +W+ERN+RIFK   +    LWE I+A    W+ 
Subjt:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS

Query:  SSKLFANYDASSIALNWKAFL
         SKLF+NYD  SIALN  AF+
Subjt:  SSKLFANYDASSIALNWKAFL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-1236.36Show/hide
Query:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS
        E ++H+ IHC  +   W   Q+L   +      +++A N C         +Q+ +I  +  A +LW +W+ERN+RIFK   +    LWE I+A    W+ 
Subjt:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS

Query:  SSKLFANYDASSIALNWKAFL
         SKLF+NYD  SIALN  AF+
Subjt:  SSKLFANYDASSIALNWKAFL

KAA0056004.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.8e-1336.36Show/hide
Query:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS
        E ++H+ IHC  +   W   ++L   +      Q++A N C         +Q+ +I  + +A +LW +W+ERN+RIFK   + +  LWE I+A    W+ 
Subjt:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS

Query:  SSKLFANYDASSIALNWKAFL
         SKLF+NYD  SIALN  AF+
Subjt:  SSKLFANYDASSIALNWKAFL

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.4e-1240Show/hide
Query:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF
        H+ I C IA + W+S+  H +S V+  S       C      K  +++++I+ +  A+ LW++W+ERN+RIF    ++ A++WE I A A  W S S LF
Subjt:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF

Query:  ANYDASSIALNWKAF
        +NY ASSIALN  AF
Subjt:  ANYDASSIALNWKAF

TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein8.9e-1336.36Show/hide
Query:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS
        E ++H+ IHC  +   W   Q+L   +      +++A N C         +Q+ +I  +  A +LW +W+ERN+RIFK   +    LWE I+A    W+ 
Subjt:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS

Query:  SSKLFANYDASSIALNWKAFL
         SKLF+NYD  SIALN  AF+
Subjt:  SSKLFANYDASSIALNWKAFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein8.9e-1336.36Show/hide
Query:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS
        E ++H+ IHC  +   W   Q+L   +      +++A N C         +Q+ +I  +  A +LW +W+ERN+RIFK   +    LWE I+A    W+ 
Subjt:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS

Query:  SSKLFANYDASSIALNWKAFL
         SKLF+NYD  SIALN  AF+
Subjt:  SSKLFANYDASSIALNWKAFL

A0A5A7ULE1 LINE-1 retrotransposable element ORF2 protein2.3e-1336.36Show/hide
Query:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS
        E ++H+ IHC  +   W   ++L   +      Q++A N C         +Q+ +I  + +A +LW +W+ERN+RIFK   + +  LWE I+A    W+ 
Subjt:  ETLDHILIHCSIASTFW---QSLHGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWAS

Query:  SSKLFANYDASSIALNWKAFL
         SKLF+NYD  SIALN  AF+
Subjt:  SSKLFANYDASSIALNWKAFL

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein1.2e-1240Show/hide
Query:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF
        H+ I C IA + W+S+  H +S V+  S       C      K  +++++I+ +  A+ LW++W+ERN+RIF    ++ A++WE I A A  W S S LF
Subjt:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF

Query:  ANYDASSIALNWKAF
        +NY ASSIALN  AF
Subjt:  ANYDASSIALNWKAF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.2e-1240Show/hide
Query:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF
        H+ I C IA + W+S+  H +S V+  S       C      K  +++++I+ +  A+ LW++W+ERN+RIF    ++ A++WE I A A  W S S LF
Subjt:  HILIHCSIASTFWQSL--HGASGVHFPSQAIAHNFCEEAFFRKGNSQRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLF

Query:  ANYDASSIALNWKAF
        +NY ASSIALN  AF
Subjt:  ANYDASSIALNWKAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGATGTTTGTTTTCTTAATTCAGAAGGAATTGATGCATTGATGGAGAAGTTCATCAGTTTCGAGATGGAGAGAACCAGAAACTTTACAATCTCATCTTGCAACCC
TGCAACGACGCTCTTCAACGCGGTCGCCATCGACTACGCCAATGTCATTCCCAGTGCCGCTCCTTGGATGATTCAACGCATCGTAAAAGTCCTGGGCGAATCTAGCGATA
TCCAACAAATCCACTTCGCTCCAGGGTATAAGTTCACGTTCGTGAGGACGGAGGTGCTAGTGCAGAACTTTCCGGAATTCAGGTTCGAGATAACCGATGGGGACGCTATA
GATGGTGTATTTTCCAATATAGAGGTAGTGATAACCTTGGAGGAGAAGCCAAATGGACAGTCGACTTTTGTTGCCAATGTCACATTCTACGCAATCAAGGGCGGCGAGGA
AGCTGAAAAGAGAGCCGACGAGGGGATGGAGAAAGCAAAGCTGCTTTTCAATGCCGTCAATGCCTACCTCCATTTGGAGACCTTAGACCACATTTTAATTCACTGTTCCA
TTGCTTCAACCTTCTGGCAATCTCTTCATGGTGCTTCGGGGGTCCATTTCCCGTCTCAGGCTATAGCTCATAATTTCTGCGAGGAGGCCTTTTTTCGGAAGGGCAACTCC
CAGCGAAGCATTATTATTCAGTCTATGACTGCAGCTATTTTGTGGTCTTTATGGATGGAGCGAAACTCTCGGATTTTTAAAAATCTTTCCCGCTCAACCGCTCAACTCTG
GGAAGTTATCATTGCTAACGCGTCTTACTGGGCTTCCTCTTCTAAGTTGTTTGCTAACTATGATGCATCTTCAATAGCTTTGAACTGGAAAGCTTTCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAGATGTTTGTTTTCTTAATTCAGAAGGAATTGATGCATTGATGGAGAAGTTCATCAGTTTCGAGATGGAGAGAACCAGAAACTTTACAATCTCATCTTGCAACCC
TGCAACGACGCTCTTCAACGCGGTCGCCATCGACTACGCCAATGTCATTCCCAGTGCCGCTCCTTGGATGATTCAACGCATCGTAAAAGTCCTGGGCGAATCTAGCGATA
TCCAACAAATCCACTTCGCTCCAGGGTATAAGTTCACGTTCGTGAGGACGGAGGTGCTAGTGCAGAACTTTCCGGAATTCAGGTTCGAGATAACCGATGGGGACGCTATA
GATGGTGTATTTTCCAATATAGAGGTAGTGATAACCTTGGAGGAGAAGCCAAATGGACAGTCGACTTTTGTTGCCAATGTCACATTCTACGCAATCAAGGGCGGCGAGGA
AGCTGAAAAGAGAGCCGACGAGGGGATGGAGAAAGCAAAGCTGCTTTTCAATGCCGTCAATGCCTACCTCCATTTGGAGACCTTAGACCACATTTTAATTCACTGTTCCA
TTGCTTCAACCTTCTGGCAATCTCTTCATGGTGCTTCGGGGGTCCATTTCCCGTCTCAGGCTATAGCTCATAATTTCTGCGAGGAGGCCTTTTTTCGGAAGGGCAACTCC
CAGCGAAGCATTATTATTCAGTCTATGACTGCAGCTATTTTGTGGTCTTTATGGATGGAGCGAAACTCTCGGATTTTTAAAAATCTTTCCCGCTCAACCGCTCAACTCTG
GGAAGTTATCATTGCTAACGCGTCTTACTGGGCTTCCTCTTCTAAGTTGTTTGCTAACTATGATGCATCTTCAATAGCTTTGAACTGGAAAGCTTTCTTGTAG
Protein sequenceShow/hide protein sequence
MIDVCFLNSEGIDALMEKFISFEMERTRNFTISSCNPATTLFNAVAIDYANVIPSAAPWMIQRIVKVLGESSDIQQIHFAPGYKFTFVRTEVLVQNFPEFRFEITDGDAI
DGVFSNIEVVITLEEKPNGQSTFVANVTFYAIKGGEEAEKRADEGMEKAKLLFNAVNAYLHLETLDHILIHCSIASTFWQSLHGASGVHFPSQAIAHNFCEEAFFRKGNS
QRSIIIQSMTAAILWSLWMERNSRIFKNLSRSTAQLWEVIIANASYWASSSKLFANYDASSIALNWKAFL