CuGenDBv2

Gene ID	Spg032144
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	pre-rRNA-processing protein TSR2 homolog
Genome location	scaffold11:39337883..39338268
RNA-Seq Expression	Spg032144
Synteny	Spg032144
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019398 - Pre-rRNA-processing protein TSR2

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8650358.1 hypothetical protein Csa_010013 [Cucumis sativus]

2.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]

2.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]

3.7e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]

3.7e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]

2.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7I9 Uncharacterized protein

1.4e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X2

1.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X1

1.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X2

1.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEPID L STNYKAGS+S LQMAISSVFSRWDGLQMAI NQWGG DSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog

1.8e-42

91.75

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Query:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        MEP D LASTNYKAGS+SGLQ AISSVFSRWDGLQMAI NQWGG DSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQ
Subjt:  MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

SwissProt top hits

e value

%identity

Alignment

Q3T090 Pre-rRNA-processing protein TSR2 homolog

1.9e-04

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Query:  AISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        A+ +    W  LQ+A+ N +GG  S +K+  L   V  +F ++   L ++++E+ L E ++  F+T +EDGS+ Q
Subjt:  AISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog

6.4e-05

33.33

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Query:  AISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        A+ +    W  LQ+A+ N +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ Q
Subjt:  AISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

Q969E8 Pre-rRNA-processing protein TSR2 homolog

2.4e-04

32.43

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Query:  ISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        + +    W  LQ+A+ N +GG  S +K+  L   V  +F ++   L ++++E+ L E L   F+T +EDGS+ Q
Subjt:  ISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region

4.2e-20

62.5

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Query:  SGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ
        S LQ  I  + SRW GLQMA+ NQWGG DS +KS  LA ++F   SQS   + VE++ENLLHE+LLLSFNTEIEDGSIE+
Subjt:  SGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

Sequences

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CDS sequence

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ATGGAGCCAATTGATAGGTTAGCCTCAACCAATTACAAGGCAGGATCTATCTCCGGCCTCCAAATGGCCATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTAATAACCAATGGGGCGGATGCGATTCTCACCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGAAGATC
TGGAAAATTTGCTCCACGAAACCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAG

mRNA sequence

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Protein sequence

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MEPIDRLASTNYKAGSISGLQMAISSVFSRWDGLQMAINNQWGGCDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQ

Spg032144 (gene) of Sponge gourd (cylindrica) v1 genome