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Spg032223 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032223
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:33236787..33245153
RNA-Seq ExpressionSpg032223
SyntenySpg032223
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA22050.1 hypothetical protein CARUB_v10002590mg, partial [Capsella rubella]6.3e-1130Show/hide
Query:  NQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIAN
        N+E W PPP   +K N D +WN +  + G+GW++R+  G  + MG+  +R+  S   +E   I  ++ + L   R    +II ES+S+ +V  LN++  N
Subjt:  NQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIAN

Query:  ESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
              ++++I     L+ +   V  PR  NG+A  +A+ +  F+ N+ P
Subjt:  ESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

PNT77801.1 hypothetical protein BRADI_1g69052v3, partial [Brachypodium distachyon]3.4e-1233.56Show/hide
Query:  QEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANE
        +E+W  PP   +KINVDAS++ D+  G IG +IRD+ G  +   + ++     + S E T +   LE  +A   +   +II+  +++EVV ALN      
Subjt:  QEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANE

Query:  SETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
        S    I EE       +G+   + C R  N +AH LAR     Q  FSP
Subjt:  SETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]8.3e-1130.41Show/hide
Query:  LTSESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRA
        +++  +E+Q+ W+PPP  +LK+NVDA+ N   ++ G+G ++RDS G  V  G  +   R  +   EA  I   L+    + + + + +I+E++  +V   
Subjt:  LTSESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRA

Query:  LNHEIANESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA
        +N+   + SE   I+ EI  +      + F   PR  N  AHSLA+ A
Subjt:  LNHEIANESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA

XP_015384077.1 uncharacterized protein LOC107176301 [Citrus sinensis]2.6e-1233.54Show/hide
Query:  SESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALN
        + S+  Q  W PPP  + K+NVDA+ N  ++  G+G +IRDS+ + V  G  +   + S+   EA  I+  L+    + R + S +I+ES+ +EVV  +N
Subjt:  SESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALN

Query:  HEIANESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPSFVVEH
        +  +N++    I+EEI  +      V     PRT N  AHSLA+ A G     +P+  V+H
Subjt:  HEIANESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPSFVVEH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-1036.5Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W PP     K+N +A+W  D   GGIGWI+RD +G  +      IR   +I  LE   I E L A     +E    I LES+S+E +  L+ +  +++E 
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA
          +LEEI      +  VS     R AN +AH LAR A
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA

TrEMBL top hitse value%identityAlignment
A0A1J3C7A8 Putative ribonuclease H protein (Fragment)4.0e-1134.25Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W PPP G LK NVD +W+++  R GIGW++RDS+G  + MG+   RK  ++ S  AT I     A   +T    S II E++S E + A++ + A     
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
        + I ++I +  + +     V  PR  NG+A  +A+    F+ N+ P
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

A0A2K2DU38 RNase H domain-containing protein (Fragment)1.6e-1233.56Show/hide
Query:  QEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANE
        +E+W  PP   +KINVDAS++ D+  G IG +IRD+ G  +   + ++     + S E T +   LE  +A   +   +II+  +++EVV ALN      
Subjt:  QEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANE

Query:  SETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
        S    I EE       +G+   + C R  N +AH LAR     Q  FSP
Subjt:  SETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

A0A6J1CP26 uncharacterized protein LOC1110134125.2e-1136.5Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W PP     K+N +A+W  D   GGIGWI+RD +G  +      IR   +I  LE   I E L A     +E    I LES+S+E +  L+ +  +++E 
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA
          +LEEI      +  VS     R AN +AH LAR A
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA

A0A6J5UAY2 Reverse transcriptase domain-containing protein6.8e-1132.09Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W  PP G+LK+N DA+W    + GG+GW++RDS G  V  G     +  S  ++EA  I E+L   +A  +   S++ +ES+S++V+R +  E   +   
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLA
          I+ +I           F+  PR  N  AH +A
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLA

R0HAP3 RNase H domain-containing protein (Fragment)3.1e-1130Show/hide
Query:  NQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIAN
        N+E W PPP   +K N D +WN +  + G+GW++R+  G  + MG+  +R+  S   +E   I  ++ + L   R    +II ES+S+ +V  LN++  N
Subjt:  NQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIAN

Query:  ESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
              ++++I     L+ +   V  PR  NG+A  +A+ +  F+ N+ P
Subjt:  ESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.3e-1030.14Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W  PP   +K N DA+W  +  R GIGWI+R+  G  + MG+  + +  ++   E   +     A L  +R +  +II ES++  +V  LN +    +  
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
        +  LE+I        EV F   PR  N +A  +AR +  F  N+ P
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

AT3G09510.1 Ribonuclease H-like superfamily protein1.6e-0728.48Show/hide
Query:  TSESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLAST-RESRSQIILESESIEVVRA
        T +  EN+  W  PP   +K N DA ++  +     GWIIR+  G+P+  GS ++    +   LEA T  ++L A L  T     +Q+ +E +   ++  
Subjt:  TSESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLAST-RESRSQIILESESIEVVRA

Query:  LNHEIANESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPS
        +N  I+  S     LE+I   A+    + F    R  N +AH LA+    +   +S S
Subjt:  LNHEIANESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPS

AT3G25270.1 Ribonuclease H-like superfamily protein6.5e-0629.56Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQ----IILESESIEVVRALNHEIAN
        W  PP   +K N D ++N   R    GW++RD  G  +G G A       I S  + ++    +A + + + + SQ    +I E +S +V   +N+E  N
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQ----IILESESIEVVRALNHEIAN

Query:  ESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPSFVVEHAYV
              I  E         E  F   PRT N  A  LA+     QPN S  F   H YV
Subjt:  ESETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPSFVVEHAYV

AT4G29090.1 Ribonuclease H-like superfamily protein1.5e-1332.19Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W PPP   +K N DA+WN D  R GIGW++R+ +G    MG+  + K  S+   E   +     A L+ +R   + +I ES+S  ++  LN++    S  
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP
        +  ++++    S   EV FV  PR  N +A  +AR +  F  N+ P
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSP

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0728.47Show/hide
Query:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET
        W+PP    LK N DAS ++     G+GWI+R+SQG+ +  G  + + R +    E +T+   + A  AS      ++I E ++  + R +N + +N    
Subjt:  WTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANESET

Query:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA
        +  L+ I         + F    R  NG A  LA+ A
Subjt:  RVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACCTCGGAGAGCCAGGAGAATCAGGAAATATGGACTCCCCCACCGGTCGGAATTTTGAAGATCAACGTGGATGCATCGTGGAATGATGATCAGAGACGAGGTGG
GATCGGATGGATAATTCGTGATTCTCAAGGATCTCCTGTAGGAATGGGAAGCGCAAGGATCAGGAAAAGATGGTCAATTTGCTCCCTGGAAGCAACAACTATCAACGAGA
GTTTAGAAGCTTACCTGGCTTCAACGAGAGAATCTCGGTCTCAAATCATCCTCGAATCAGAATCGATCGAGGTGGTTAGGGCTCTAAATCATGAGATCGCAAATGAATCG
GAGACGCGAGTGATTTTAGAAGAAATCGACTTGAAGGCGTCTCTCATTGGTGAAGTTTCGTTCGTGAAATGTCCCCGAACGGCTAACGGAATCGCGCACTCCCTCGCGCG
TTCAGCGGCTGGATTTCAGCCGAATTTTTCGCCGTCTTTCGTTGTTGAACATGCTTATGTCTGTGTTCGTTCTGCTCGTTGTTGTTCCGAATTGATATTGATTTCAAGTA
TTAGAATTTTTGCACTTGTGGATGTTGTAGCTCCGAAACCTTTGATTAGATGCCAGTACGTCATTCATGCTCAACTATCAACTTTGGGTGCTGATGGACTGTCAACAGCA
CGAGTAGAGAAATCCGTTCTTCCAGTGTCTTCTGTGTTTGAAAATTTAAATGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCACCTCGGAGAGCCAGGAGAATCAGGAAATATGGACTCCCCCACCGGTCGGAATTTTGAAGATCAACGTGGATGCATCGTGGAATGATGATCAGAGACGAGGTGG
GATCGGATGGATAATTCGTGATTCTCAAGGATCTCCTGTAGGAATGGGAAGCGCAAGGATCAGGAAAAGATGGTCAATTTGCTCCCTGGAAGCAACAACTATCAACGAGA
GTTTAGAAGCTTACCTGGCTTCAACGAGAGAATCTCGGTCTCAAATCATCCTCGAATCAGAATCGATCGAGGTGGTTAGGGCTCTAAATCATGAGATCGCAAATGAATCG
GAGACGCGAGTGATTTTAGAAGAAATCGACTTGAAGGCGTCTCTCATTGGTGAAGTTTCGTTCGTGAAATGTCCCCGAACGGCTAACGGAATCGCGCACTCCCTCGCGCG
TTCAGCGGCTGGATTTCAGCCGAATTTTTCGCCGTCTTTCGTTGTTGAACATGCTTATGTCTGTGTTCGTTCTGCTCGTTGTTGTTCCGAATTGATATTGATTTCAAGTA
TTAGAATTTTTGCACTTGTGGATGTTGTAGCTCCGAAACCTTTGATTAGATGCCAGTACGTCATTCATGCTCAACTATCAACTTTGGGTGCTGATGGACTGTCAACAGCA
CGAGTAGAGAAATCCGTTCTTCCAGTGTCTTCTGTGTTTGAAAATTTAAATGGTTAG
Protein sequenceShow/hide protein sequence
MLTSESQENQEIWTPPPVGILKINVDASWNDDQRRGGIGWIIRDSQGSPVGMGSARIRKRWSICSLEATTINESLEAYLASTRESRSQIILESESIEVVRALNHEIANES
ETRVILEEIDLKASLIGEVSFVKCPRTANGIAHSLARSAAGFQPNFSPSFVVEHAYVCVRSARCCSELILISSIRIFALVDVVAPKPLIRCQYVIHAQLSTLGADGLSTA
RVEKSVLPVSSVFENLNG