; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032224 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032224
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:33743958..33746088
RNA-Seq ExpressionSpg032224
SyntenySpg032224
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-3362.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTS+FDRIKP TTR LVFQR+SMA  EEENQC +ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP
        + + K F E N D K+ S  PS MKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3265.89Show/hide
Query:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP
         K+ S  PS MKRK SV INTEGSL   P
Subjt:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.2e-3367.44Show/hide
Query:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSIFDRIKP TTR LVFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP
         K+ S  PS MKRK SV INTEGSL   P
Subjt:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3161.27Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP
        +L+ K F E N D K+ +  PS MKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3262.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTS+FDRIKP TTR LVFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP
        + + K F E N D K+ S  PS MKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein4.1e-3362.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTS+FDRIKP TTR LVFQR+SMA  EEENQC +ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP
        + + K F E N D K+ S  PS MKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP

A0A5A7TQ06 Retrotransposon gag protein7.0e-3365.89Show/hide
Query:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP
         K+ S  PS MKRK SV INTEGSL   P
Subjt:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP

A0A5A7UI09 Retrotransposon gag protein5.9e-3261.27Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP
        +L+ K F E N D K+ +  PS MKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein1.1e-3367.44Show/hide
Query:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSIFDRIKP TTR LVFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP
         K+ S  PS MKRK SV INTEGSL   P
Subjt:  KKLQSSNPSCMKRKFSVLINTEGSLKFLP

A0A5D3D209 Retrotransposon gag protein5.4e-3362.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTS+FDRIKP TTR LVFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP
        + + K F E N D K+ S  PS MKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCATCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTTAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCT
CCGCTCGTCCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCATGTATGAAGAGGAAGTTCTCTGTTCTCATAAATAC
AGAAGGTTCCTTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCTCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTT
CCTCCAAGTTCGAAGGCTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGGAGGTTCTCACA
CTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTTCTCTCCAAATTTGAAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGTTGTAGTTCCTTCTCTCCAAG
GTTCTCATGCGCTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAATTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTCCTTCC
TTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCCTCTCCAAGTTCGAAGGTTC
TCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTG
TGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGG
TCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCAAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCC
CTGTACTCATGCAGAAGGGCGTGGCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCATCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTTAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCT
CCGCTCGTCCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCATGTATGAAGAGGAAGTTCTCTGTTCTCATAAATAC
AGAAGGTTCCTTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCTCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTT
CCTCCAAGTTCGAAGGCTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGGAGGTTCTCACA
CTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTTCTCTCCAAATTTGAAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGTTGTAGTTCCTTCTCTCCAAG
GTTCTCATGCGCTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAATTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTCCTTCC
TTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCCTCTCCAAGTTCGAAGGTTC
TCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTG
TGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGG
TCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCAAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCC
CTGTACTCATGCAGAAGGGCGTGGCGGTGA
Protein sequenceShow/hide protein sequence
MLNKSFSKNFHKKEKENFATSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTRPLVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKR
KMDNLEVKLFDEVNSDKKLQSSNPSCMKRKFSVLINTEGSLKFLPPKFEGSHALLCSSFLPNSKVLTRSAAVPSSKFEGSHALRCSSFLQVRRFSRAPLQFLPPSSEVLT
LFLPHVVSLQFLLSKFEVPSLKFEGSHVFRCSSFSPRFSCAALQFLLPKFEGFHTLRYNSFSPSSKVLTLRSFLHHVRRFSRCTTSLFLLQVRRFSRCTTSLFPLQVRRF
SRYAASFSKFEGSHATLECVAVLLSSLSSKDPTLRCCVASFTKFEGSHAALLRCSFSKFEGSHAALLPSPSSKVFMLRSAALLRYFLKSKEHVLVLVQRRGGGKSTRNMS
LYSCRRAWR