; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032241 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032241
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:33971406..33978954
RNA-Seq ExpressionSpg032241
SyntenySpg032241
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-3252.57Show/hide
Query:  QPDSDVVTVVMTERRTIEERMAEMQE----HINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTR
        QP   +       R  +E+   E+ E    H  +++K     DS      +EVD+S + +Q TSVFD IKP TTR SVFQR+SM   EEENQC  ST  R
Subjt:  QPDSDVVTVVMTERRTIEERMAEMQE----HINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTR

Query:  PSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
         S F+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Subjt:  PSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3150.85Show/hide
Query:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS
        K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S + +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST 
Subjt:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS

Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
         R S F+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.5e-3354.39Show/hide
Query:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF
        QP   +       R  +E+   E+ E       +I E D+  +   KEVD+S + +Q TSVFD IKP TTR SVFQR+SM   EEENQC  ST  R STF
Subjt:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF

Query:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
        +RLS+STSKK RPSTS FDRLK+TNDQ +R+M  L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Subjt:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3150.85Show/hide
Query:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS
        K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S + +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST 
Subjt:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS

Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
         R S F+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

TYK28197.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.4e-3253.8Show/hide
Query:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF
        QP   +       R  +E    E+ E       +I E D+  +    EVD+S + +QGTSVFDCIKP TTR SVFQR+SM   EEENQC  ST TR S F
Subjt:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF

Query:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
        +RLS+STSKK RPSTS FDR+K+TNDQ K +M +L+ K F E N + K+HS +PSRMK+K SV INTEGSL
Subjt:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.8e-3252.57Show/hide
Query:  QPDSDVVTVVMTERRTIEERMAEMQE----HINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTR
        QP   +       R  +E+   E+ E    H  +++K     DS      +EVD+S + +Q TSVFD IKP TTR SVFQR+SM   EEENQC  ST  R
Subjt:  QPDSDVVTVVMTERRTIEERMAEMQE----HINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTR

Query:  PSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
         S F+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Subjt:  PSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein6.9e-3250.85Show/hide
Query:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS
        K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S + +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST 
Subjt:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS

Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
         R S F+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7VDY3 Ty3-gypsy retrotransposon protein3.6e-3354.39Show/hide
Query:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF
        QP   +       R  +E+   E+ E       +I E D+  +   KEVD+S + +Q TSVFD IKP TTR SVFQR+SM   EEENQC  ST  R STF
Subjt:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF

Query:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
        +RLS+STSKK RPSTS FDRLK+TNDQ +R+M  L+ K F E N + K+HS +PSRMKRK SV INTEGSL
Subjt:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3CCI8 Retrotransposon gag protein6.9e-3250.85Show/hide
Query:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS
        K     QP   +       R  +E+   E+ E       +I E D+  +   +EVD+S + +Q TSVFD IKP TTR SVFQR+SM   EE+NQC  ST 
Subjt:  KYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTS

Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
         R S F+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N + K+H+ +PSRMKRK SV INTEGSL
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3DWJ4 Retrotransposon gag protein3.1e-3253.8Show/hide
Query:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF
        QP   +       R  +E    E+ E       +I E D+  +    EVD+S + +QGTSVFDCIKP TTR SVFQR+SM   EEENQC  ST TR S F
Subjt:  QPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDCIKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTF

Query:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL
        +RLS+STSKK RPSTS FDR+K+TNDQ K +M +L+ K F E N + K+HS +PSRMK+K SV INTEGSL
Subjt:  QRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTATTGTTAAGTATAACCCTTTGTATCAACCTGATTCTGACGTAGTGACTGTCGTGATGACTGAGAGAAGGACTATAGAAGAAAGAATGGCTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAAAGAGGTTGACAGTTCCAGGAAAGGTGAACAAGGGACTTCCGTCTTCGATTGC
ATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGGCAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAACTTTCCA
AAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGA
AACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATTCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGAAAAAC
AGAAGAAAAGCTGGGATTTCCCAGAAATGCGACCACATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTTGCACACGGGT
CGTTGTTGACGAGTCTTCTTCACACCTAACCGGCTTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGCTTCGCAGCAATTCCTTCTCTCCAAGTTCGAGGGTGCTTACG
TTGTACGCTACTGCGTTGTTCCTTCTCCAATTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTGTTGCACGATTTACCGCAAGCATA
CGGGTCGTCATAAGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGA
CAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCAGATGTAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTATTGTTAAGTATAACCCTTTGTATCAACCTGATTCTGACGTAGTGACTGTCGTGATGACTGAGAGAAGGACTATAGAAGAAAGAATGGCTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAAAGAGGTTGACAGTTCCAGGAAAGGTGAACAAGGGACTTCCGTCTTCGATTGC
ATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGGCAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAACTTTCCA
AAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGA
AACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATTCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGAAAAAC
AGAAGAAAAGCTGGGATTTCCCAGAAATGCGACCACATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTTGCACACGGGT
CGTTGTTGACGAGTCTTCTTCACACCTAACCGGCTTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGCTTCGCAGCAATTCCTTCTCTCCAAGTTCGAGGGTGCTTACG
TTGTACGCTACTGCGTTGTTCCTTCTCCAATTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTGTTGCACGATTTACCGCAAGCATA
CGGGTCGTCATAAGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGA
CAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCAGATGTAGATTAG
Protein sequenceShow/hide protein sequence
MGSTAHCCFNELRLQEDKASIIVGQETTLQGAYTNDKFIVKYNPLYQPDSDVVTVVMTERRTIEERMAEMQEHINTLMKAIEEKDSQIEHLKKEVDSSRKGEQGTSVFDC
IKPSTTRPSVFQRMSMVAAEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTNDQPKRKMGNLEVKLFDEVNSNKKLHSSIPSRMKRKFSVLINTEGSLKKN
RRKAGISQKCDHISGKAKMKCDRISGKTEAVPSCTRVVVDESSSHLTGFPSLQVQRFSCASQQFLLSKFEGAYVVRYCVVPSPILKVLRCTLLRCSFSKFEGVARFTASI
RVVIRIEIKEDHTPLAVASRISKLIEESSKDKVAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVD