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Spg032246 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032246
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:34806459..34808305
RNA-Seq ExpressionSpg032246
SyntenySpg032246
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]1.9e-1548.72Show/hide
Query:  SNQKLYLELDKGEQRTSNLCCLCSGQFWANRLGISFSFLQS--SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRT
        SNQKLYL+++ G+    ++          NR  +    L +  SIDYMTEILS RLYGTVCT                  VEIELPVPD LP SAESS +
Subjt:  SNQKLYLELDKGEQRTSNLCCLCSGQFWANRLGISFSFLQS--SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRT

Query:  SSCTWVELYIESVHIEM
        +S TW+ELY ESVH+EM
Subjt:  SSCTWVELYIESVHIEM

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]7.3e-1576.36Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC
        MTEILS RLYGTVCTQV+IELP+PDTLP SAESS ++  TW+ELY ESVH+E+FC
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1360.53Show/hide
Query:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC
        SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++S TW+ELY E VH+EMFC
Subjt:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1360.53Show/hide
Query:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC
        SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++S TW+ELY E VH+EMFC
Subjt:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1363.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS ++S TW+ELY+E VH+EMF
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMF

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein9.3e-1648.72Show/hide
Query:  SNQKLYLELDKGEQRTSNLCCLCSGQFWANRLGISFSFLQS--SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRT
        SNQKLYL+++ G+    ++          NR  +    L +  SIDYMTEILS RLYGTVCT                  VEIELPVPD LP SAESS +
Subjt:  SNQKLYLELDKGEQRTSNLCCLCSGQFWANRLGISFSFLQS--SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRT

Query:  SSCTWVELYIESVHIEM
        +S TW+ELY ESVH+EM
Subjt:  SSCTWVELYIESVHIEM

A0A5A7V638 Uncharacterized protein3.5e-1576.36Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC
        MTEILS RLYGTVCTQV+IELP+PDTLP SAESS ++  TW+ELY ESVH+E+FC
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein5.1e-1460.53Show/hide
Query:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC
        SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++S TW+ELY E VH+EMFC
Subjt:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein5.1e-1460.53Show/hide
Query:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC
        SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++S TW+ELY E VH+EMFC
Subjt:  SIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFC

A0A5D3DX39 Reverse transcriptase6.7e-1463.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS ++S TW+ELY+E VH+EMF
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATCAGAAGCTCTATTTGGAGTTAGATAAAGGGGAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGCATCTCATT
TTCATTTCTTCAGAGTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGC
CAGCGTCTGCTGAAAGTTCCAGAACAAGCTCCTGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAAATGTTTTGTAAGGATTGGATAATATCGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATCAGAAGCTCTATTTGGAGTTAGATAAAGGGGAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGCATCTCATT
TTCATTTCTTCAGAGTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGC
CAGCGTCTGCTGAAAGTTCCAGAACAAGCTCCTGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAAATGTTTTGTAAGGATTGGATAATATCGTCCTAG
Protein sequenceShow/hide protein sequence
MSNQKLYLELDKGEQRTSNLCCLCSGQFWANRLGISFSFLQSSIDYMTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSCTWVELYIESVHIEMFCKDWIISS