CuGenDBv2

Gene ID	Spg032247
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold2:33324902..33327465
RNA-Seq Expression	Spg032247
Synteny	Spg032247
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

1.0e-27

66.37

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR  VFQR+SM   E+ENQCPMST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK S+ INTEGSL
Subjt:  RKFSILINTEGSL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.3e-27

66.37

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Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR SVFQR+S+   E+ENQCP ST TR SAF+ LS+STSKK R STS FDRLK+ NDQ +R+M +L+VK F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK S+ INTEGSL
Subjt:  RKFSILINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.4e-28

67.26

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Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK S+ INTEGSL
Subjt:  RKFSILINTEGSL

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.0e-27

67.26

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR SVFQR+SM   E+ENQCPMST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S   SR+K
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK SI INTEGSL
Subjt:  RKFSILINTEGSL

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.0e-27

66.37

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TS+F+RIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK SI INT+GSL
Subjt:  RKFSILINTEGSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZJ7 Retrotransposon gag protein

4.9e-28

66.37

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR  VFQR+SM   E+ENQCPMST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK S+ INTEGSL
Subjt:  RKFSILINTEGSL

A0A5A7TGM1 Retrotransposon gag protein

6.3e-28

66.37

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR SVFQR+S+   E+ENQCP ST TR SAF+ LS+STSKK R STS FDRLK+ NDQ +R+M +L+VK F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK S+ INTEGSL
Subjt:  RKFSILINTEGSL

A0A5A7TQ06 Retrotransposon gag protein

1.7e-28

67.26

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK S+ INTEGSL
Subjt:  RKFSILINTEGSL

A0A5A7U974 Retrotransposon gag protein

4.9e-28

67.26

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TSVF+RIKP TTR SVFQR+SM   E+ENQCPMST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S   SR+K
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK SI INTEGSL
Subjt:  RKFSILINTEGSL

A0A5D3D5Q0 Gag protease polyprotein

4.9e-28

66.37

Show/hide

Query:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK
        TS+F+RIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS   SRMK
Subjt:  TSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMK

Query:  RKFSILINTEGSL
        RK SI INT+GSL
Subjt:  RKFSILINTEGSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTCCGTCTTCAATCGCATTAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAAAAGAAAATCAATGTCCGATGTCCACATC
CACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGGTCTTCAACATCTGTTTTTGATCGTCTCAAAGTAACAAACGACCAACCTAAAAGAA
AGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCACCTTGTCACGTATGAAGAGGAAGTTTTCTATTCTCATAAATACA
GAAGGTTCCTTGAAGTTCGAAGGTTCTCATGCTACGCTAGGCTGCGCTGCTGCGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGTTTCCTT
CTCCAAGTTTGAAGGTTCTGACGCTGCACTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTCTCCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTC
GCTGCAGTTCCTTCTCTCCAAGTTCGAAAGTTCTCATGCGCTTCGCAGTAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACAGCGTTGTTCCTTCTCC
AAGTTTGAAGGTTTTCCGATGCATGCTCCTGCGTTGCTCCTTCTCCAAGTTCAAAGGTTCTCGGCTTGCGTTGTTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCAC
GTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACATTGCGCTGCTTCCTTCACCAAGTTCGAAAGTTCTGACGTTGCGCTACTTCCTTCTCCAAGTTC
GAAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCA
AAGGGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCCTCCTGCAACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTCGTCCTCCTGCAACAGTTCCTTCTTCCAAGTT
CGAAGGTTCTCACGTTGCTTCTTCCTCATGTTGCTTCACTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGCTTCTGCTCCTCCGAAGGTTCTAACGCTTCGCTACAGTT
CCTTCCTCCGAAGGTTTTTTCGCTGTGTTGCTGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTCGTCCTCCTGCAACAGTTCTTTCTTCCAAGTTTGAAGGTTCTCACG
CTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGGGTTCTCATGCACCGCCTTCCTCCAAGTTCGAAGGTTCTCACGCTGCTTCTTTCTCACGTTGCTTCGCTACAGT
TCCTTCCTCCGAACGTTCTAACGCTGCTTCTGCTTCCTCACGTTGCTTCGTTGCAGTTCCTTCCTCCTACAGTTCCTTGTTCCTTCTCTCCAAGTTCAAAGGTTTTCACG
TTGCTTCGTTGTTCGAAGGTCCTTCCTCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGGTTCTTGCGTTGCAGCAGGAAAGGAGCCCAAATGA

mRNA sequence

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Protein sequence

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MTSVFNRIKPSTTRPSVFQRMSMVATEKENQCPMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSTLSRMKRKFSILINT
EGSLKFEGSHATLGCAAALLPSLSLKVPTLRCCAVSFSKFEGSDAALLPSPSSKVLTLRSPVPSSKFEGSHALRCSSFSPSSKVLMRFAVVPSLQVRGCLRCTLQRCSFS
KFEGFPMHAPALLLLQVQRFSACVVALLPSSSSKVLTLRYCAPSFSKFEGSDIALLPSPSSKVLTLRYFLLQVRSSFSKFEGSHVASLQFLLSKFEGSHAASLQFLPPSS
KGFSRCFAAVPSSCNSSFLQVRRFSRRPPATVPSSKFEGSHVASSSCCFTTVPSSEGSNAASAPPKVLTLRYSSFLRRFFRCVAVPSSKFEGSHVVLLQQFFLPSLKVLT
LLRCSSFLQVRRGSHAPPSSKFEGSHAASFSRCFATVPSSERSNAASASSRCFVAVPSSYSSLFLLSKFKGFHVASLFEGPSSYTALHRCSFNKFEGSCVAAGKEPK

Spg032247 (gene) of Sponge gourd (cylindrica) v1 genome