CuGenDBv2

Gene ID	Spg032252
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	trafficking protein particle complex subunit 6B
Genome location	scaffold2:32972253..32989005
RNA-Seq Expression	Spg032252
Synteny	Spg032252
Gene Ontology terms	GO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process) GO:0043087 - regulation of GTPase activity (biological process) GO:0005801 - cis-Golgi network (cellular component) GO:0005802 - trans-Golgi network (cellular component) GO:0030008 - TRAPP complex (cellular component)
InterPro domains	IPR007194 - Transport protein particle (TRAPP) component IPR024096 - NO signalling/Golgi transport ligand-binding domain superfamily IPR037992 - TRAPP complex, Trs33 subunit

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7023966.1 Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-92

98.83

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        RWLTRMSVDPPQ ESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

XP_022154611.1 trafficking protein particle complex subunit 6B [Momordica charantia]

3.8e-90

97.09

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Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        M REVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
        RWLTRMSVDP QSESQ+ SADGE+KAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

XP_022961590.1 trafficking protein particle complex subunit 6B [Cucurbita moschata]

1.4e-92

98.83

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        RWLTRMSVDPPQ ESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

XP_023545328.1 trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo]

4.0e-92

98.25

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Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        RWLTRMSVDPPQ ESQ+NSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

XP_038878648.1 trafficking protein particle complex subunit 6B [Benincasa hispida]

1.3e-90

98.26

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Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREVSESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
        RWLTRMSVD PQSESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BP90 trafficking protein particle complex subunit 6B isoform X2

3.1e-90

97.09

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
        RWLTRMSVD PQ+ESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

A0A5D3CG65 Trafficking protein particle complex subunit 6B isoform X2

3.1e-90

97.09

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
        RWLTRMSVD PQ+ESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

A0A6J1DP88 trafficking protein particle complex subunit 6B

1.8e-90

97.09

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        M REVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
        RWLTRMSVDP QSESQ+ SADGE+KAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

A0A6J1HCN4 trafficking protein particle complex subunit 6B

6.7e-93

98.83

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        RWLTRMSVDPPQ ESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

A0A6J1I0Q5 trafficking protein particle complex subunit 6B

6.7e-93

98.83

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        RWLTRMSVDPPQ ESQ+NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Subjt:  RWLTRMSVDPPQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

SwissProt top hits

e value

%identity

Alignment

F1QMV3 Trafficking protein particle complex subunit 6b

9.2e-31

47.06

Show/hide

Query:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY
        ++E +G++VG  L ER+T + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT++S      E                   L 
Subjt:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY

Query:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        F CG++RGALSN+G+   V+A++S +PAC F V I+
Subjt:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

Q32L78 Trafficking protein particle complex subunit 6B

2.4e-31

49.26

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Query:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY
        ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS      E                S +L 
Subjt:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY

Query:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        F CG+IRG LSNLGI   V+A++S++PAC F V I+
Subjt:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

Q78XR0 Trafficking protein particle complex subunit 6A

1.1e-23

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Query:  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLYF
        +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L  M   P   E                   L F
Subjt:  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLYF

Query:  PCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
         CG++ GAL  LG    V+A +++LPAC F V I+
Subjt:  PCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

Q86SZ2 Trafficking protein particle complex subunit 6B

2.4e-31

49.26

Show/hide

Query:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY
        ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS      E                S +L 
Subjt:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY

Query:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        F CG+IRG LSNLGI   V+A++S++PAC F V I+
Subjt:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

Q9D289 Trafficking protein particle complex subunit 6B

1.2e-30

47.79

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Query:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY
        ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S      E                S +L 
Subjt:  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQSESQENSADGENKAAQATSMHLY

Query:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
        F CG+IRG LSNLGI   V+A++S++PAC F V I+
Subjt:  FPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK

Arabidopsis top hits

e value

%identity

Alignment

AT3G05000.1 Transport protein particle (TRAPP) component

1.5e-81

82.08

Show/hide

Query:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF
        MGREV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF+DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+F
Subjt:  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF

Query:  RWLTRMSVDP-PQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
        RWL+R+S+DP  ++E+Q+ S  GE+KAAQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Subjt:  RWLTRMSVDP-PQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAGAGAGGTGTCAGAGAGCTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACATATTGCAATCGATTCTACGCCAATAAGCCGGAGCTTGCCGCTCGCCGCAT
TGAGGCAATAGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACAATGGAGCGACCTCGGTTCACTGATCATTTGGAGGCAATCAAATTTATCTGCAAGGACTTCT
GGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAACCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTTCGCTGGCTTACACGCATGTCCGTCGATCCT
CCTCAAAGTGAATCACAGGAAAATTCTGCGGATGGTGAAAACAAGGCAGCTCAGGCGACAAGCATGCATCTATATTTCCCGTGCGGAATCATAAGAGGTGCTCTCTCAAA
TTTGGGAATTCCTTGTGCAGTTTCTGCTGATATTTCAAATCTCCCTGCATGTTCGTTTGTTGTCCGTATAAAGGCCTGA

mRNA sequence

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Protein sequence

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MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP
PQSESQENSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA

Spg032252 (gene) of Sponge gourd (cylindrica) v1 genome