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Spg032261 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032261
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionZinc finger, CCHC-type
Genome locationscaffold2:34774480..34776891
RNA-Seq ExpressionSpg032261
SyntenySpg032261
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0536.08Show/hide
Query:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
        + N  ++E E  A        E  W +  I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]2.2e-0536.08Show/hide
Query:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
        + N  ++E E  A        E  W +  I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase1.1e-0536.08Show/hide
Query:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
        + N  ++E E  A        E  W +  I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
A0A5D3CW05 Zinc finger, CCHC-type1.1e-0536.08Show/hide
Query:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
        + N  ++E E  A        E  W +  I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  FINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQIHSHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGAGGCCAAAGAATCGAAAAGAATCAAAGTTTGAGGCTTACAAATGAGGCTAATCCAAGAGCTAGCGTCGAGACGCTGCTTTCTGGGCATCTCGACGCTAGCAA
TTTTCTTATCTCATTCAGGCGGCAAAGGTCACAGCGTCGAGACACTGTGATTACTACAGCATCGAGACGCTCCTGTCTAGCGAGAGCAGGCCGTCGTCAACGCTACAGGA
TTCCTGCCCAGCCACGTGAAGCAATTGCAATCGAGAAAATCCATCCGTCCTCGTCGCATCCAACCCCGATTTCTGACTTTTATTCAGTTTCCGCCGCTATAGCTCGTCGT
CATCATGGCCGATTGTGGGTTGTGGTGGTCCATGGTTGCGGATTGAGGAAGTTTATCAATCAAGAAGAGCAAGAAGAAGAATTCCAAGCTCCACCAGCTCGATCAAGCTC
GAATGAAGCTCCATGGATGTCAACTCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACAAGAGGCATTAA
ATAGTTACTTCCAAGCTAAGGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCATCCATTCAACCAAAAGACACAATGAATCTAAAAATTCAGATT
CATTCACATATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGAGGCCAAAGAATCGAAAAGAATCAAAGTTTGAGGCTTACAAATGAGGCTAATCCAAGAGCTAGCGTCGAGACGCTGCTTTCTGGGCATCTCGACGCTAGCAA
TTTTCTTATCTCATTCAGGCGGCAAAGGTCACAGCGTCGAGACACTGTGATTACTACAGCATCGAGACGCTCCTGTCTAGCGAGAGCAGGCCGTCGTCAACGCTACAGGA
TTCCTGCCCAGCCACGTGAAGCAATTGCAATCGAGAAAATCCATCCGTCCTCGTCGCATCCAACCCCGATTTCTGACTTTTATTCAGTTTCCGCCGCTATAGCTCGTCGT
CATCATGGCCGATTGTGGGTTGTGGTGGTCCATGGTTGCGGATTGAGGAAGTTTATCAATCAAGAAGAGCAAGAAGAAGAATTCCAAGCTCCACCAGCTCGATCAAGCTC
GAATGAAGCTCCATGGATGTCAACTCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACAAGAGGCATTAA
ATAGTTACTTCCAAGCTAAGGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCATCCATTCAACCAAAAGACACAATGAATCTAAAAATTCAGATT
CATTCACATATTTAA
Protein sequenceShow/hide protein sequence
MKRGQRIEKNQSLRLTNEANPRASVETLLSGHLDASNFLISFRRQRSQRRDTVITTASRRSCLARAGRRQRYRIPAQPREAIAIEKIHPSSSHPTPISDFYSVSAAIARR
HHGRLWVVVVHGCGLRKFINQEEQEEEFQAPPARSSSNEAPWMSTPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKASIQPKDTMNLKIQI
HSHI