; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032273 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032273
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold2:34669537..34674857
RNA-Seq ExpressionSpg032273
SyntenySpg032273
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5453380.1 hypothetical protein F2P56_028285, partial [Juglans regia]1.7e-2288.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

PHT53000.1 40S ribosomal protein S13 [Capsicum baccatum]1.3e-2287.3Show/hide
Query:  LGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        LGLAPEIP+D+YHLIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  LGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

PNY08741.1 40S ribosomal protein s13-like [Trifolium pratense]1.7e-2288.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

XP_004511653.1 40S ribosomal protein S13-like [Cicer arietinum]1.7e-2288.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.7e-2288.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

TrEMBL top hitse value%identityAlignment
A0A1S3UTL9 40S ribosomal protein S138.1e-2388.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

A0A2G2X6B8 30S ribosomal protein S15, chloroplastic6.2e-2387.3Show/hide
Query:  LGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        LGLAPEIP+D+YHLIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  LGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

A0A6J1HYG9 40S ribosomal protein S13-like8.1e-2388.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

A0A6J1KV63 40S ribosomal protein S13-like8.1e-2388.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

M5XGS7 Uncharacterized protein9.6e-2482.61Show/hide
Query:  AIVAFCLGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        AI +F  GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRL+RYYKKTKKLPP+WK
Subjt:  AIVAFCLGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.4e-2487.1Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL R RKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

P59223 40S ribosomal protein S13-14.9e-2587.1Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

P59224 40S ribosomal protein S13-24.9e-2587.1Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

P62302 40S ribosomal protein S132.2e-2588.71Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK VSIRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

Q69UI2 40S ribosomal protein S13-13.5e-2383.87Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+Y LIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYK+TKKLPP WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

Arabidopsis top hitse value%identityAlignment
AT2G19600.1 K+ efflux antiporter 41.3e-0460.53Show/hide
Query:  LCSGENMFQLSGAKLSEGVFVGSFLSMSSTIVVVKFLM
        +C       L G KL+EG+FVG+FLSMSST VV+KFLM
Subjt:  LCSGENMFQLSGAKLSEGVFVGSFLSMSSTIVVVKFLM

AT3G60770.1 Ribosomal protein S13/S153.5e-2687.1Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

AT4G00100.1 ribosomal protein S13A3.5e-2687.1Show/hide
Query:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK
        GLAPEIP+D+YHLIKK V+IRKHL RNRKD DSKFRLILVES+IHRLARYYKKTKKLPP+WK
Subjt:  GLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDSKFRLILVESKIHRLARYYKKTKKLPPIWK

AT5G51710.1 K+ efflux antiporter 57.6e-0570.59Show/hide
Query:  LSGAKLSEGVFVGSFLSMSSTIVVVKFLMMQLSS
        L GA+LSEG+FVG+FLSMSST VVVKFL+ + S+
Subjt:  LSGAKLSEGVFVGSFLSMSSTIVVVKFLMMQLSS

AT5G51710.2 K+ efflux antiporter 57.6e-0570.59Show/hide
Query:  LSGAKLSEGVFVGSFLSMSSTIVVVKFLMMQLSS
        L GA+LSEG+FVG+FLSMSST VVVKFL+ + S+
Subjt:  LSGAKLSEGVFVGSFLSMSSTIVVVKFLMMQLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTCCCCTCCCCTCCAGCGAATAGCTCCGACGACGGCGCAGCAGCAGCGGCGGTTCATCGACGTCGAGCACTCCTTCGCGCGGTCAACGGCGATTTTTGCCGGCA
TTTTTTTGATGAGTTTCAAGCAGGGAAGCAGCTGTTTTCACAATTTTCCGACAGTTCCGTTCAACAAGCTTTCCCTTCAAATTTTGGCGATTCAAGCAGTGGGTCTTCGA
CTTTCAACGTCTTTGAGCAATTTCGGCATTGGCTTGTTTTACAAAAGAAGTTTATCAAAATCCATAGCCAAAAGAGAAGTAACAGAGAAATTGATGAGAGCAAGACAAAG
GAATCCTTCGGCCTTTTTGAAGGGACGTCCAATTGTAGTCGGCTATGGTTATGTAATCTTTGCTCTGGAGAAAATATGTTCCAGTTAAGTGGAGCTAAATTGTCCGAGGG
TGTATTTGTTGGTTCATTTCTATCAATGTCATCGACAATAGTGGTGGTGAAGTTCTTGATGATGCAGTTGTCTTCTCGAACAAATGAGTTGTATCACGTTGCTATTGTGG
CATTCTGCTTGGGGCTAGCTCCTGAAATCCCAAAGGATATTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGCGGAGAAACAGGAAAGACAATGATTCC
AAGTTTAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCTTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTATTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTCCCCTCCCCTCCAGCGAATAGCTCCGACGACGGCGCAGCAGCAGCGGCGGTTCATCGACGTCGAGCACTCCTTCGCGCGGTCAACGGCGATTTTTGCCGGCA
TTTTTTTGATGAGTTTCAAGCAGGGAAGCAGCTGTTTTCACAATTTTCCGACAGTTCCGTTCAACAAGCTTTCCCTTCAAATTTTGGCGATTCAAGCAGTGGGTCTTCGA
CTTTCAACGTCTTTGAGCAATTTCGGCATTGGCTTGTTTTACAAAAGAAGTTTATCAAAATCCATAGCCAAAAGAGAAGTAACAGAGAAATTGATGAGAGCAAGACAAAG
GAATCCTTCGGCCTTTTTGAAGGGACGTCCAATTGTAGTCGGCTATGGTTATGTAATCTTTGCTCTGGAGAAAATATGTTCCAGTTAAGTGGAGCTAAATTGTCCGAGGG
TGTATTTGTTGGTTCATTTCTATCAATGTCATCGACAATAGTGGTGGTGAAGTTCTTGATGATGCAGTTGTCTTCTCGAACAAATGAGTTGTATCACGTTGCTATTGTGG
CATTCTGCTTGGGGCTAGCTCCTGAAATCCCAAAGGATATTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGCGGAGAAACAGGAAAGACAATGATTCC
AAGTTTAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCTTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTATTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MCVPSPPANSSDDGAAAAAVHRRRALLRAVNGDFCRHFFDEFQAGKQLFSQFSDSSVQQAFPSNFGDSSSGSSTFNVFEQFRHWLVLQKKFIKIHSQKRSNREIDESKTK
ESFGLFEGTSNCSRLWLCNLCSGENMFQLSGAKLSEGVFVGSFLSMSSTIVVVKFLMMQLSSRTNELYHVAIVAFCLGLAPEIPKDIYHLIKKVVSIRKHLRRNRKDNDS
KFRLILVESKIHRLARYYKKTKKLPPIWK