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Spg032309 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032309
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold2:35513631..35520874
RNA-Seq ExpressionSpg032309
SyntenySpg032309
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-0458.54Show/hide
Query:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+ IH FP LG +
Subjt:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-0468.42Show/hide
Query:  VRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLG
        VRVA  PTQYA+ F DKTEW AG++ TQ+ IH FPLLG
Subjt:  VRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLG
TYK19425.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-0467.65Show/hide
Query:  PTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
        PTQYA+ F DKTEW AG++TTQ+ IHFFP LG +
Subjt:  PTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]3.7e-0862.5Show/hide
Query:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEVDEWSLKW
        ++RVA  PTQYA+ F DKTEW AG++ TQ+ IHFFP LG VD+ SL+W
Subjt:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEVDEWSLKW
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class6.0e-0465.79Show/hide
Query:  VRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLG
        VRVA  PTQYA+ F DKTEW AG+  TQ+ IH FP LG
Subjt:  VRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLG
A0A5A7TKJ4 Gag/pol protein7.1e-0558.54Show/hide
Query:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+ IH FP LG +
Subjt:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein5.5e-0568.42Show/hide
Query:  VRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLG
        VRVA  PTQYA+ F DKTEW AG++ TQ+ IH FPLLG
Subjt:  VRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLG
A0A5D3D7C0 Gag/pol protein2.7e-0467.65Show/hide
Query:  PTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
        PTQYA+ F DKTEW AG++TTQ+ IHFFP LG +
Subjt:  PTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEV
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-941.8e-0862.5Show/hide
Query:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEVDEWSLKW
        ++RVA  PTQYA+ F DKTEW AG++ TQ+ IHFFP LG VD+ SL+W
Subjt:  WVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEVDEWSLKW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACCTTCAGTAAGAGCCATCTCGATGTCTTGGACGTAGAGGAGGTGAAGAGACCCAATTGTGCTGAAGTGGGCCTGAATTATGACGCCGAAAGCCAAAGATTAAA
GCCCCGAACCGAGAAGAAGCAAGACAAAACCGAGAAAAGGAGTAGGAAGTCGAGATTAGAGGCTGGCGTCGAGACGCCGACGCAATTTCGGGCCGAAGACAATAGTTCGC
AGCATCGAGACTCTTTAGATATAAGTAGTAATCGTTGCAGAGGTCTCGGATGGATAATTGAGCTTAGGCCGTGTCGGGAGCCGATCACGCTAATTGGTGTTAATTTGGGC
CAATTACGAAGTTTTTGGAGCCATCTCGATGTCTTGGACGTAAAGGAGGTGAAGAGACCCAATTGTGCTAAAGCGGGCCTGAATTATGACGCCGAAAGCCAAAGATTGAA
GCTCCGAACCTTGAAGAAGCGAGACAAAACCGAGAAAAGGAGCAGGAAGTCGAGATTAGAGGCTGGCGTCGAGACGCCAACGCGATTTCGGGCAGAAGACAATAGTTCGC
AGCGTCGAGACGCTGTTCCCTGGGGTCTCGACGTCGGCGTCTTTTCTATATATATTATATTAGGTCTCGATTTAGTCCGCCGGCAAGTAGATGAGTGTTCCTTTAGGGGC
CGATTCCAGGTCTTGAACAAGGGCGCACATCCTCTCCTGGCCCGAGAGGAACTTTTGCTTACTGGTTGGACCATAAACGAGTTGTTCATTAGACGAATCAGTGCATGGGT
GAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTCGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAAGAATTCACTTCTTCCCGCTTCTAG
GTGAAGTAGATGAGTGGTCCCTTAAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACACCTTCAGTAAGAGCCATCTCGATGTCTTGGACGTAGAGGAGGTGAAGAGACCCAATTGTGCTGAAGTGGGCCTGAATTATGACGCCGAAAGCCAAAGATTAAA
GCCCCGAACCGAGAAGAAGCAAGACAAAACCGAGAAAAGGAGTAGGAAGTCGAGATTAGAGGCTGGCGTCGAGACGCCGACGCAATTTCGGGCCGAAGACAATAGTTCGC
AGCATCGAGACTCTTTAGATATAAGTAGTAATCGTTGCAGAGGTCTCGGATGGATAATTGAGCTTAGGCCGTGTCGGGAGCCGATCACGCTAATTGGTGTTAATTTGGGC
CAATTACGAAGTTTTTGGAGCCATCTCGATGTCTTGGACGTAAAGGAGGTGAAGAGACCCAATTGTGCTAAAGCGGGCCTGAATTATGACGCCGAAAGCCAAAGATTGAA
GCTCCGAACCTTGAAGAAGCGAGACAAAACCGAGAAAAGGAGCAGGAAGTCGAGATTAGAGGCTGGCGTCGAGACGCCAACGCGATTTCGGGCAGAAGACAATAGTTCGC
AGCGTCGAGACGCTGTTCCCTGGGGTCTCGACGTCGGCGTCTTTTCTATATATATTATATTAGGTCTCGATTTAGTCCGCCGGCAAGTAGATGAGTGTTCCTTTAGGGGC
CGATTCCAGGTCTTGAACAAGGGCGCACATCCTCTCCTGGCCCGAGAGGAACTTTTGCTTACTGGTTGGACCATAAACGAGTTGTTCATTAGACGAATCAGTGCATGGGT
GAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTCGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAAGAATTCACTTCTTCCCGCTTCTAG
GTGAAGTAGATGAGTGGTCCCTTAAGTGGTGA
Protein sequenceShow/hide protein sequence
MNTFSKSHLDVLDVEEVKRPNCAEVGLNYDAESQRLKPRTEKKQDKTEKRSRKSRLEAGVETPTQFRAEDNSSQHRDSLDISSNRCRGLGWIIELRPCREPITLIGVNLG
QLRSFWSHLDVLDVKEVKRPNCAKAGLNYDAESQRLKLRTLKKRDKTEKRSRKSRLEAGVETPTRFRAEDNSSQRRDAVPWGLDVGVFSIYIILGLDLVRRQVDECSFRG
RFQVLNKGAHPLLAREELLLTGWTINELFIRRISAWVRVANTPTQYAFLFRDKTEWEAGDMTTQERIHFFPLLGEVDEWSLKW