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Spg032317 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032317
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:33230665..33235082
RNA-Seq ExpressionSpg032317
SyntenySpg032317
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-2663.74Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN
        M LV +GGW+SDNGTFR GY  QL  +M EKLPG  V A + I+ R++TLK+ +QTIAEM GP CSGFGWN+E KCI AEKE FD WV+S+
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN

KAA0051960.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-2630.94Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLW---VKSNLRNWKF
        M LV+ GGWRSDNGTFR GY  QL  +M  K+PG ++ A S I+SR++ +K+ +  +AEM GP CSGFGWN+E KCI AEKE FD W       L N +F
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLW---VKSNLRNWKF

Query:  VM------------------------------------------------------------------------------------HITEA---VREGMA
        V                                                                                     H T++   VR  + 
Subjt:  VM------------------------------------------------------------------------------------HITEA---VREGMA

Query:  LFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLLDKH
           EQL  IA+WP  +R    + R +IV HL  +P+L    R ++M IL  N+    SFL +   +K  YC  +L ++
Subjt:  LFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLLDKH

KAA0053511.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-2632.93Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN-----LRNW
        M LV +GGW+SDNGTFR GY  QL  +M EKLPG  V A + I+ R++TLK+ +Q I EM GP CSGFGWN+E KCI AEKE FD WV+S+     L N 
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN-----LRNW

Query:  KFVMH-----------------------------------------------------------ITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDK
         F  +                                                             EA+   +    EQLK IA+WP +  A +   R +
Subjt:  KFVMH-----------------------------------------------------------ITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDK

Query:  IVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
            L E+P+L +  R  +   L + M     F+ +    +  +C  LL
Subjt:  IVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

KAA0059630.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-3039.58Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVK-------SNLR
        M LV +GGW+SDNGTFR GY  QL  +M EKLPG  V A + I+ R++TLK+ +Q IAEM GP CS FGWN++ KCI AEKE FD WV+       S  +
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVK-------SNLR

Query:  NWKFVMHITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
                 EA+   +    +QL+ IA+WP +  A +   R +    L E+P+L +  R  +   L + M     F+ +    +  +C  LL
Subjt:  NWKFVMHITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.2e-3735.25Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN---------
        + LV  GGWRSDNGTF+ GY  QL+ +M EKLPG ++   S I+  V++LKK Y  IAEM GP CSGFGWNEEF+CI AE++ FD W+KS+         
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN---------

Query:  ---------------------------------------------------------------------------LRNWKFV---------MHITEAVRE
                                                                                    RN   V             E +R 
Subjt:  ---------------------------------------------------------------------------LRNWKFV---------MHITEAVRE

Query:  GMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
         M    EQLK+IADWP++KRA E E R ++V  L ++P L ++ R K+M ILF +++A   FLSI   LKLEYC  LL
Subjt:  GMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.5e-3735.25Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN---------
        + LV  GGWRSDNGTF+ GY  QL+ +M EKLPG ++   S I+  V++LKK Y  IAEM GP CSGFGWNEEF+CI AE++ FD W+KS+         
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN---------

Query:  ---------------------------------------------------------------------------LRNWKFV---------MHITEAVRE
                                                                                    RN   V             E +R 
Subjt:  ---------------------------------------------------------------------------LRNWKFV---------MHITEAVRE

Query:  GMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
         M    EQLK+IADWP++KRA E E R ++V  L ++P L ++ R K+M ILF +++A   FLSI   LKLEYC  LL
Subjt:  GMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

A0A5A7U0H7 Retrotransposon protein2.5e-3735.25Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN---------
        + LV  GGWRSDNGTF+ GY  QL+ +M EKLPG ++   S I+  V++LKK Y  IAEM GP CSGFGWNEEF+CI AE++ FD W+KS+         
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN---------

Query:  ---------------------------------------------------------------------------LRNWKFV---------MHITEAVRE
                                                                                    RN   V             E +R 
Subjt:  ---------------------------------------------------------------------------LRNWKFV---------MHITEAVRE

Query:  GMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
         M    EQLK+IADWP++KRA E E R ++V  L ++P L ++ R K+M ILF +++A   FLSI   LKLEYC  LL
Subjt:  GMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

A0A5A7U5A6 Retrotransposon protein1.2e-2663.74Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN
        M LV +GGW+SDNGTFR GY  QL  +M EKLPG  V A + I+ R++TLK+ +QTIAEM GP CSGFGWN+E KCI AEKE FD WV+S+
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN

A0A5A7UIZ2 Retrotransposon protein1.2e-2632.93Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN-----LRNW
        M LV +GGW+SDNGTFR GY  QL  +M EKLPG  V A + I+ R++TLK+ +Q I EM GP CSGFGWN+E KCI AEKE FD WV+S+     L N 
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSN-----LRNW

Query:  KFVMH-----------------------------------------------------------ITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDK
         F  +                                                             EA+   +    EQLK IA+WP +  A +   R +
Subjt:  KFVMH-----------------------------------------------------------ITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDK

Query:  IVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
            L E+P+L +  R  +   L + M     F+ +    +  +C  LL
Subjt:  IVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

A0A5A7UWW9 Retrotransposon protein3.0e-3039.58Show/hide
Query:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVK-------SNLR
        M LV +GGW+SDNGTFR GY  QL  +M EKLPG  V A + I+ R++TLK+ +Q IAEM GP CS FGWN++ KCI AEKE FD WV+       S  +
Subjt:  MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVK-------SNLR

Query:  NWKFVMHITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL
                 EA+   +    +QL+ IA+WP +  A +   R +    L E+P+L +  R  +   L + M     F+ +    +  +C  LL
Subjt:  NWKFVMHITEAVREGMALFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTAGTTCATGTTGGCGGTTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGTGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGT
TCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTAAAGAAACAATACCAGACTATTGCAGAGATGATGGGCCCTGGATGCAGTGGCTTCGGCTGGAACGAGGAAT
TTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTATGGGTGAAGTCAAACTTACGCAATTGGAAATTCGTCATGCACATCACAGAAGCTGTGAGAGAGGGAATGGCC
TTGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGAAAAAAAACGTGCCACAGAGGCAGAGTTCCGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCGACCT
GGAGAACCGAAAAAGGGTGAAGATCATGGATATCCTTTTCAATAACATGAAAGCGACAGGGAGCTTCCTCTCCATTCTTGCTCCTTTGAAGTTGGAGTATTGTGAATACC
TCTTGGACAAACACACCGCCACTCCAGCCCTCCAACGTGTTTGTCTTCTTCGAGCAGAGTCGCCCGAAGCATCTCTCAGCCTCTCTCTCTCTCTCTCTCACACCCGTTTT
CTCTTCCTCCGCCAGCACCCACGCGAGCTTCCTCCACCTCCCTCTCTCGGCTTTCAGTTCCGTCGGCCAGCACCCACCGTCGCCTTGTCGTGCCTCGCCGGAATCTCTGT
TCGAATGGCCGTTAGAGTTGTGTTGGGTAAGAGCATTCTCTTGAATATCGTTTTGCTCTTAATTGAGGTTCTGAGTAGATTCCTAGCCTTGAAACCCTGCCTTTATTATT
GCAGGAGCTCGTTCGGTTCGCTTAAGAGCATTTTAGCAATTAGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAATGGATTAAGAGGAGCA
TCCGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTGTGAAAGTCATCGGGTGCCTTGGTTCGAGGCCTTGGGTAATATGGTCAAGGGTCGAAC
GCTGAGCGCCGTAGAGAAACGTCGAGGCCCTGGGCATGTTATTGTGATTGAAAAGCATGACGTTTGCCTTGTATGTTGTGATGAGGAATACTACGAGCCTGGTAATGCTG
AGGAGCACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTAGTTCATGTTGGCGGTTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGTGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGT
TCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTAAAGAAACAATACCAGACTATTGCAGAGATGATGGGCCCTGGATGCAGTGGCTTCGGCTGGAACGAGGAAT
TTAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTATGGGTGAAGTCAAACTTACGCAATTGGAAATTCGTCATGCACATCACAGAAGCTGTGAGAGAGGGAATGGCC
TTGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGAAAAAAAACGTGCCACAGAGGCAGAGTTCCGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCGACCT
GGAGAACCGAAAAAGGGTGAAGATCATGGATATCCTTTTCAATAACATGAAAGCGACAGGGAGCTTCCTCTCCATTCTTGCTCCTTTGAAGTTGGAGTATTGTGAATACC
TCTTGGACAAACACACCGCCACTCCAGCCCTCCAACGTGTTTGTCTTCTTCGAGCAGAGTCGCCCGAAGCATCTCTCAGCCTCTCTCTCTCTCTCTCTCACACCCGTTTT
CTCTTCCTCCGCCAGCACCCACGCGAGCTTCCTCCACCTCCCTCTCTCGGCTTTCAGTTCCGTCGGCCAGCACCCACCGTCGCCTTGTCGTGCCTCGCCGGAATCTCTGT
TCGAATGGCCGTTAGAGTTGTGTTGGGTAAGAGCATTCTCTTGAATATCGTTTTGCTCTTAATTGAGGTTCTGAGTAGATTCCTAGCCTTGAAACCCTGCCTTTATTATT
GCAGGAGCTCGTTCGGTTCGCTTAAGAGCATTTTAGCAATTAGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAATGGATTAAGAGGAGCA
TCCGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTGTGAAAGTCATCGGGTGCCTTGGTTCGAGGCCTTGGGTAATATGGTCAAGGGTCGAAC
GCTGAGCGCCGTAGAGAAACGTCGAGGCCCTGGGCATGTTATTGTGATTGAAAAGCATGACGTTTGCCTTGTATGTTGTGATGAGGAATACTACGAGCCTGGTAATGCTG
AGGAGCACGCTTGA
Protein sequenceShow/hide protein sequence
MSLVHVGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQTIAEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKSNLRNWKFVMHITEAVREGMA
LFTEQLKSIADWPEKKRATEAEFRDKIVSHLMEVPDLENRKRVKIMDILFNNMKATGSFLSILAPLKLEYCEYLLDKHTATPALQRVCLLRAESPEASLSLSLSLSHTRF
LFLRQHPRELPPPPSLGFQFRRPAPTVALSCLAGISVRMAVRVVLGKSILLNIVLLLIEVLSRFLALKPCLYYCRSSFGSLKSILAISEYQVPRVKMVEGWYVTNGLRGA
SGALGNMAKGRCDESIRCESHRVPWFEALGNMVKGRTLSAVEKRRGPGHVIVIEKHDVCLVCCDEEYYEPGNAEEHA