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Spg032336 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032336
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:33949501..33953610
RNA-Seq ExpressionSpg032336
SyntenySpg032336
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1047.25Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++S  ++ +      + MF +  +Q  +           +  +DV WLHA+F  K A GP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0952.94Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG
        +VEIELPVPDTLPTSAESS ++S  ++ +   F+   +     + + EDDV WLHA+FR K A GPGG
Subjt:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1047.25Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++S  ++ +      + MF +  +Q  +           +  +DV WLHA+F  K A GP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]9.2e-1052.7Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSS----KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG
        +VEIELPVPDTLPTSAES   +      C +S  M+  F+RFNV  G    +  DDV WLHA+FR K+A  P G
Subjt:  LVEIELPVPDTLPTSAESSRTSS----KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0952.94Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG
        +VEIELPVPDTLPTSAESS ++S  ++ +   F+   +     + + EDDV WLHA+FR K A GPGG
Subjt:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase9.0e-1147.25Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++S  ++ +      + MF +  +Q  +           +  +DV WLHA+F  K A GP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG

A0A5A7VMG9 Reverse transcriptase1.0e-0952.94Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG
        +VEIELPVPDTLPTSAESS ++S  ++ +   F+   +     + + EDDV WLHA+FR K A GPGG
Subjt:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG

A0A5D3BTP3 Reverse transcriptase9.0e-1147.25Show/hide
Query:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG
        V+KSNQKLYLVEIELPVPDTL TSAESSR++S  ++ +      + MF +  +Q  +           +  +DV WLHA+F  K A GP G
Subjt:  VYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISM------ISMFIRFNVQEGQRVS--------LEEDDVRWLHAIFRTKLACGPGG

A0A5D3C0X3 Retrotrans_gag domain-containing protein4.5e-1052.7Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSS----KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG
        +VEIELPVPDTLPTSAES   +      C +S  M+  F+RFNV  G    +  DDV WLHA+FR K+A  P G
Subjt:  LVEIELPVPDTLPTSAESSRTSS----KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG

A0A5D3DX39 Reverse transcriptase1.0e-0952.94Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG
        +VEIELPVPDTLPTSAESS ++S  ++ +   F+   +     + + EDDV WLHA+FR K A GPGG
Subjt:  LVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGGAAGAAGAAGAAGAATTTCAGCACAGGATTTTCGAGCAAACTAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGGGCATTCTGGGGTGTACAAGTCGAATCA
GAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAATGTTTTATATCTATGATTAGTATGTTTA
TCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCATGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGGAAGAAGAAGAAGAATTTCAGCACAGGATTTTCGAGCAAACTAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGGGCATTCTGGGGTGTACAAGTCGAATCA
GAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAATGTTTTATATCTATGATTAGTATGTTTA
TCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCATGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MKEEEEEEFQHRIFEQTRRISGVLWCFGHSGVYKSNQKLYLVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRTKLACGPGG