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Spg032360 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032360
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:34502387..34510525
RNA-Seq ExpressionSpg032360
SyntenySpg032360
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-2860.61Show/hide
Query:  LFGLSYTEGVKRQRGNRLSLQTGELDKT-----------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQ--------------TRFNV
        LFGL Y EG KR RGNR SLQTGELDKT                 VEIELPVPDTLPT AESS S+SSTWLEL  E V  +                FNV
Subjt:  LFGLSYTEGVKRQRGNRLSLQTGELDKT-----------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQ--------------TRFNV

Query:  SVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGV
        SVGS  IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  SVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.2e-2555.97Show/hide
Query:  LFGLSYTEGVKRQ----------------------RGNRLSLQTGELDKTVEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQTRF----NVSV---
        LFGLSY E ++ +                      RGNR +L TG+LDKTVEIELPVPDTLPT AESS+S+SSTWLELY ESV  +  F    +V V   
Subjt:  LFGLSYTEGVKRQ----------------------RGNRLSLQTGELDKTVEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQTRF----NVSV---

Query:  ----GSIGIVRGDDVCWLHAVFRAKLAGGPGGGV
            GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  ----GSIGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.3e-2663.56Show/hide
Query:  RGNRLSLQTGELDKT---------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW
        RGNRLSLQT ELDKT               V IELPVPD LPT AESS S+SSTWLELY ESV      +F  +        FNVSVGS GIVRGDDVCW
Subjt:  RGNRLSLQTGELDKT---------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGVT
        LHAVFRAK  GGPGGGVT
Subjt:  LHAVFRAKLAGGPGGGVT

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]8.4e-2737.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAES-SRSSSSTW--------------FNVSVGSTGIVRGDDVCFLHAVFRAKL
        MTEILS +LY TVCT                  VEIELPVPDTLPTSAES +++    W              FNVSVGS GI+RGDDVC+LHAVFRAK+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAES-SRSSSSTW--------------FNVSVGSTGIVRGDDVCFLHAVFRAKL

Query:  AGGPGGG-------SEINLSTSG-FLFGLSYTEGVKRQRGNRLSLQTGELDKTVEIELPVPDTL----------PTFAESS-------------------
        AG P GG        E    T G    G S   G    R  R +    E+ +        P+ +           T  ESS                   
Subjt:  AGGPGGG-------SEINLSTSG-FLFGLSYTEGVKRQRGNRLSLQTGELDKTVEIELPVPDTL----------PTFAESS-------------------

Query:  ---------------------------RSSSSTWLEL---------YIESVTFQTRFNVSVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                                    +    +LEL         Y    T  +RFNVSVGS  IVRGDDVCWLHAVFRAK AGGPG GVT
Subjt:  ---------------------------RSSSSTWLEL---------YIESVTFQTRFNVSVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.2e-2765.25Show/hide
Query:  RGNRLSLQTGELDKTV---------------EIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW
        RGNRLSLQTGELDKTV                IELPVPDTLPT AESS S+SSTWLELY ESV      +F  +        FNVSVGS GIVRGDDVCW
Subjt:  RGNRLSLQTGELDKTV---------------EIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGVT
        LHAVFRAK  GGPGGGVT
Subjt:  LHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.3e-2860.61Show/hide
Query:  LFGLSYTEGVKRQRGNRLSLQTGELDKT-----------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQ--------------TRFNV
        LFGL Y EG KR RGNR SLQTGELDKT                 VEIELPVPDTLPT AESS S+SSTWLEL  E V  +                FNV
Subjt:  LFGLSYTEGVKRQRGNRLSLQTGELDKT-----------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQ--------------TRFNV

Query:  SVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGV
        SVGS  IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  SVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein5.9e-2655.97Show/hide
Query:  LFGLSYTEGVKRQ----------------------RGNRLSLQTGELDKTVEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQTRF----NVSV---
        LFGLSY E ++ +                      RGNR +L TG+LDKTVEIELPVPDTLPT AESS+S+SSTWLELY ESV  +  F    +V V   
Subjt:  LFGLSYTEGVKRQ----------------------RGNRLSLQTGELDKTVEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQTRF----NVSV---

Query:  ----GSIGIVRGDDVCWLHAVFRAKLAGGPGGGV
            GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  ----GSIGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein4.5e-2663.56Show/hide
Query:  RGNRLSLQTGELDKT---------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW
        RGNRLSLQT ELDKT               V IELPVPD LPT AESS S+SSTWLELY ESV      +F  +        FNVSVGS GIVRGDDVCW
Subjt:  RGNRLSLQTGELDKT---------------VEIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGVT
        LHAVFRAK  GGPGGGVT
Subjt:  LHAVFRAKLAGGPGGGVT

A0A5D3C0X3 Retrotrans_gag domain-containing protein4.1e-2737.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAES-SRSSSSTW--------------FNVSVGSTGIVRGDDVCFLHAVFRAKL
        MTEILS +LY TVCT                  VEIELPVPDTLPTSAES +++    W              FNVSVGS GI+RGDDVC+LHAVFRAK+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAES-SRSSSSTW--------------FNVSVGSTGIVRGDDVCFLHAVFRAKL

Query:  AGGPGGG-------SEINLSTSG-FLFGLSYTEGVKRQRGNRLSLQTGELDKTVEIELPVPDTL----------PTFAESS-------------------
        AG P GG        E    T G    G S   G    R  R +    E+ +        P+ +           T  ESS                   
Subjt:  AGGPGGG-------SEINLSTSG-FLFGLSYTEGVKRQRGNRLSLQTGELDKTVEIELPVPDTL----------PTFAESS-------------------

Query:  ---------------------------RSSSSTWLEL---------YIESVTFQTRFNVSVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                                    +    +LEL         Y    T  +RFNVSVGS  IVRGDDVCWLHAVFRAK AGGPG GVT
Subjt:  ---------------------------RSSSSTWLEL---------YIESVTFQTRFNVSVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.1e-2765.25Show/hide
Query:  RGNRLSLQTGELDKTV---------------EIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW
        RGNRLSLQTGELDKTV                IELPVPDTLPT AESS S+SSTWLELY ESV      +F  +        FNVSVGS GIVRGDDVCW
Subjt:  RGNRLSLQTGELDKTV---------------EIELPVPDTLPTFAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSIGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGVT
        LHAVFRAK  GGPGGGVT
Subjt:  LHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGAACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCTAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTTTCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAGTCAAGAGGCAAAGAGGAAATAGGTTGAGTCTACAAACCGGGGAACTA
GATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTTTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTAC
TTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAATAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTGTGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGAACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCTAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTTTCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAGTCAAGAGGCAAAGAGGAAATAGGTTGAGTCTACAAACCGGGGAACTA
GATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTTTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTAC
TTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAATAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTGTGACATAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCFLHAVFRAKLAGGPGGGSEINLSTSGFLFGLSYTEGVKRQRGNRLSLQTGEL
DKTVEIELPVPDTLPTFAESSRSSSSTWLELYIESVTFQTRFNVSVGSIGIVRGDDVCWLHAVFRAKLAGGPGGGVT