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Spg032361 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032361
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold2:34413078..34415858
RNA-Seq ExpressionSpg032361
SyntenySpg032361
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.1e-2045.95Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN
        +EA  +AQ+YMS  E   SKR           +  R   KR+++ D  +G R +      +  P  KFEKYT T VP EQVLMEI+N  LLK+P RM ++
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN

Query:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA
          +R K +YCLFH DHGH+T++C  LK+E+E  I  GYLKE+V EP A
Subjt:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.5e-2347.97Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN
        +EA  +AQ+YMS  E   SKR           D  R   KR+++ D  +G R +      +  P  KFEKYTPT VP EQVLMEI++  LLK+P RMK++
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN

Query:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA
          +R K +YCLFHRDHGH+T++C  LK+E+E  I+ GYLKE+V EP A
Subjt:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]4.2e-2140.21Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNP
        AEA  +AQKYMS EE    K+ E E KR      D+K+++  +     +     D   G+     KFEKYTPT VP EQVLMEI++  LLK+P  MK+ P
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNP

Query:  DRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRDQNHLWRTSWKRSFDSSITFKIEPVED
        ++R K +YCLFHRDHGH+T +C  LK+E+E  I+ GYLKE+V +  A   +      ++PTR+   +   S ++  D      +    D
Subjt:  DRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRDQNHLWRTSWKRSFDSSITFKIEPVED

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]7.9e-2045.27Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN
        +E   +AQ+YMS  E   SKR           D  R   KR+++ D  +G R +      +  P  KFEKYTPT VP EQVLMEI++  LLK+P RMK  
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN

Query:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA
          +R K +YCLFHRDH H+T++   LK+E+E  I+ GYL+E+V EP A
Subjt:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA

XP_030929562.1 uncharacterized protein LOC115955545 [Quercus lobata]2.7e-2046.67Show/hide
Query:  PFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTR
        P GKF  +TP   P +QVLM+I++ G L+FPG+++ +P++R K +YC FHRDHGH T NC  LK +IEA I+ G L+ F+ +  A+     P Q   P R
Subjt:  PFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTR

Query:  DQNHL
        D  HL
Subjt:  DQNHL

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.0e-2045.95Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN
        +EA  +AQ+YMS  E   SKR           +  R   KR+++ D  +G R +      +  P  KFEKYT T VP EQVLMEI+N  LLK+P RM ++
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN

Query:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA
          +R K +YCLFH DHGH+T++C  LK+E+E  I  GYLKE+V EP A
Subjt:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA

A0A6J1DWY0 uncharacterized protein LOC1110252932.2e-2347.97Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN
        +EA  +AQ+YMS  E   SKR           D  R   KR+++ D  +G R +      +  P  KFEKYTPT VP EQVLMEI++  LLK+P RMK++
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN

Query:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA
          +R K +YCLFHRDHGH+T++C  LK+E+E  I+ GYLKE+V EP A
Subjt:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA

A0A6J1DYL6 uncharacterized protein LOC1110257853.8e-2045.27Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN
        +E   +AQ+YMS  E   SKR           D  R   KR+++ D  +G R +      +  P  KFEKYTPT VP EQVLMEI++  LLK+P RMK  
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRG-RADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSN

Query:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA
          +R K +YCLFHRDH H+T++   LK+E+E  I+ GYL+E+V EP A
Subjt:  PDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGA

A0A6J1DZ52 uncharacterized protein LOC1110256122.0e-2140.21Show/hide
Query:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNP
        AEA  +AQKYMS EE    K+ E E KR      D+K+++  +     +     D   G+     KFEKYTPT VP EQVLMEI++  LLK+P  MK+ P
Subjt:  AEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNP

Query:  DRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRDQNHLWRTSWKRSFDSSITFKIEPVED
        ++R K +YCLFHRDHGH+T +C  LK+E+E  I+ GYLKE+V +  A   +      ++PTR+   +   S ++  D      +    D
Subjt:  DRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRDQNHLWRTSWKRSFDSSITFKIEPVED

A0A7N2N9G0 Reverse transcriptase6.8e-1739.24Show/hide
Query:  KAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNPDRRDK
        +A KYM+ E+ L + R E+  KR    D +R+   R++T  G R         G     G+F  +TP   P +QVLM+I++   L FPG++KS+P++R +
Subjt:  KAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPFGKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNPDRRDK

Query:  SQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRD
         +YC FHRDHGH T +C  LK +IEA I+ G L+ FV +  A+     P Q + P RD
Subjt:  SQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACACGCAGAGGTCACCGAGACGAACAGGCCAGGGAACCGAGGCCGAGGAGCCGAGACCGAGGAGAGGATGCTGACACCAAAATTGTCGCCCTTGAGGATAAGGT
GAGGGGGATGGATCAGAGTTTGTTCAGGATACTCCAAATCCTAGATAAACCTGGTCCTAGCGCCAAACTCCATGAGGGGGGCTTGATTAGAGACCCAAAGAAGGGGAAGG
AGCCAGCCGAGTACGTGGATGAATTAGAGACAGAATCAAAGGGAAAGAAGACCAACGGCGCAACCAGCAAGGTCAGGTGGCTGAAGATTGCAGAACGCACAGTTCTGAGA
AGCCCAGAACCAAGTACCAGCCGTAGAATAGACTTGCGGAACCTGATTGAAGAGAAGCGCAGAATGGCCAGAACTGCCGAGTTTGAGGCCAGAGCTGCCGAAGCTGAAGC
CAGGGCTGTCGAGGCTGAAGCCAGAGCAGCCGAGGCCGAGGGCAAGGCGCAGAAGTATATGAGCACAGAGGAGTTATTGAAATCAAAGAGGTCAGAACGAGAGCACAAAA
GACATTCTTCATTCGATCAGGACAGAAAGAAAGATAAGAGACAACAGACAGACGATGGTGGCCGAGGTCGAGCCGACCATGACCATGGCCAAGGCCGAGCACATCCTTTC
GGTAAGTTCGAGAAATACACACCAACTGTCGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACATGGGTCTTTTAAAGTTTCCTGGGAGGATGAAGTCGAATCCCGA
TAGAAGAGACAAGAGCCAGTATTGCCTTTTCCACCGGGACCATGGACATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACCGATCCAGAATGGGTATC
TGAAGGAGTTCGTCGGTGAGCCTGGGGCTGAGGCCGGCCAAAGATGGCCAAGACAAAGAAGAACCCCTACGAGAGATCAAAACCATCTTTGGAGGACCAGCTGGAAGAGG
TCATTTGATTCAAGCATCACCTTCAAGATAGAACCAGTTGAAGATAGGCGAGCCTGGGCCCCCGGGTCTACCTCGAATCATCTAGAATCGAGACCATGCGAGCCTGGACT
ACCGAGCCTACGTCTCCTCAACCAGATTCGAGACTACGTGAGCTTGGACCACCCTCACCTCATCTGGCTTGGGTCTATCACATTACGCGAGCCTGGACTACCGTGTCTAC
CTCGCCTCATCCGAATTTGGGCATATGCAGGCCCAGATCACCAAACTCACCTGGCCGACCAGATGGAGGCGGACCCTAAACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAACACGCAGAGGTCACCGAGACGAACAGGCCAGGGAACCGAGGCCGAGGAGCCGAGACCGAGGAGAGGATGCTGACACCAAAATTGTCGCCCTTGAGGATAAGGT
GAGGGGGATGGATCAGAGTTTGTTCAGGATACTCCAAATCCTAGATAAACCTGGTCCTAGCGCCAAACTCCATGAGGGGGGCTTGATTAGAGACCCAAAGAAGGGGAAGG
AGCCAGCCGAGTACGTGGATGAATTAGAGACAGAATCAAAGGGAAAGAAGACCAACGGCGCAACCAGCAAGGTCAGGTGGCTGAAGATTGCAGAACGCACAGTTCTGAGA
AGCCCAGAACCAAGTACCAGCCGTAGAATAGACTTGCGGAACCTGATTGAAGAGAAGCGCAGAATGGCCAGAACTGCCGAGTTTGAGGCCAGAGCTGCCGAAGCTGAAGC
CAGGGCTGTCGAGGCTGAAGCCAGAGCAGCCGAGGCCGAGGGCAAGGCGCAGAAGTATATGAGCACAGAGGAGTTATTGAAATCAAAGAGGTCAGAACGAGAGCACAAAA
GACATTCTTCATTCGATCAGGACAGAAAGAAAGATAAGAGACAACAGACAGACGATGGTGGCCGAGGTCGAGCCGACCATGACCATGGCCAAGGCCGAGCACATCCTTTC
GGTAAGTTCGAGAAATACACACCAACTGTCGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACATGGGTCTTTTAAAGTTTCCTGGGAGGATGAAGTCGAATCCCGA
TAGAAGAGACAAGAGCCAGTATTGCCTTTTCCACCGGGACCATGGACATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACCGATCCAGAATGGGTATC
TGAAGGAGTTCGTCGGTGAGCCTGGGGCTGAGGCCGGCCAAAGATGGCCAAGACAAAGAAGAACCCCTACGAGAGATCAAAACCATCTTTGGAGGACCAGCTGGAAGAGG
TCATTTGATTCAAGCATCACCTTCAAGATAGAACCAGTTGAAGATAGGCGAGCCTGGGCCCCCGGGTCTACCTCGAATCATCTAGAATCGAGACCATGCGAGCCTGGACT
ACCGAGCCTACGTCTCCTCAACCAGATTCGAGACTACGTGAGCTTGGACCACCCTCACCTCATCTGGCTTGGGTCTATCACATTACGCGAGCCTGGACTACCGTGTCTAC
CTCGCCTCATCCGAATTTGGGCATATGCAGGCCCAGATCACCAAACTCACCTGGCCGACCAGATGGAGGCGGACCCTAAACATTAA
Protein sequenceShow/hide protein sequence
MITRRGHRDEQAREPRPRSRDRGEDADTKIVALEDKVRGMDQSLFRILQILDKPGPSAKLHEGGLIRDPKKGKEPAEYVDELETESKGKKTNGATSKVRWLKIAERTVLR
SPEPSTSRRIDLRNLIEEKRRMARTAEFEARAAEAEARAVEAEARAAEAEGKAQKYMSTEELLKSKRSEREHKRHSSFDQDRKKDKRQQTDDGGRGRADHDHGQGRAHPF
GKFEKYTPTVVPQEQVLMEIRNMGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEAPIQNGYLKEFVGEPGAEAGQRWPRQRRTPTRDQNHLWRTSWKR
SFDSSITFKIEPVEDRRAWAPGSTSNHLESRPCEPGLPSLRLLNQIRDYVSLDHPHLIWLGSITLREPGLPCLPRLIRIWAYAGPDHQTHLADQMEADPKH