; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032373 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032373
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:36222518..36227450
RNA-Seq ExpressionSpg032373
SyntenySpg032373
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-2061Show/hide
Query:  IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK
        +  EEV+NS +  QRTSVFDRIKPSTT  SVFQR+SM   EEENQC  STSTR S F+RL++ST +K R ST +FD LK+  DQ QR+M  L+ K+F EK
Subjt:  IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.0e-2058.18Show/hide
Query:  EKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMD
        E +N   SY    EE+DNS +  QRTSVFDRIKP TT  SVFQR+SM   +EEN+C  ST TR S F+RLS+ST +K R STFVFDRLK+  DQ QR+M 
Subjt:  EKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMD

Query:  NLEVKLFDEK
         L+ K F E+
Subjt:  NLEVKLFDEK

KAA0062063.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2049.02Show/hide
Query:  KAIEEKDSQIAQLKSQIENQHIAESSQTQKKEKENFATSYC------------IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCS
        K I+ KD    Q +  I        S  +   KE    + C            +  EEVDNS +  QRT VFDRIKPSTT  SVFQR+SMV  EEENQC 
Subjt:  KAIEEKDSQIAQLKSQIENQHIAESSQTQKKEKENFATSYC------------IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCS

Query:  VSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK
        +STST+ STF+RLS+ST +K R ST  FDRLK A DQ QR+M  L+ KLF E+
Subjt:  VSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK

TYJ99972.1 hypothetical protein E5676_scaffold360G00130 [Cucumis melo var. makuwa]5.3e-2059.26Show/hide
Query:  KEKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKM
        K   N+A+S     +E+DNS +  QRTSVFDRIKPSTT  SVFQR+SM   EEENQC   TSTR S F+RLS+STL+K + ST VFDRLK+  DQ QR+M
Subjt:  KEKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKM

Query:  DNLEVKLF
          L+ K F
Subjt:  DNLEVKLF

TYK23553.1 hypothetical protein E5676_scaffold500G00600 [Cucumis melo var. makuwa]4.1e-2062.89Show/hide
Query:  EEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK
        EEVDNS K  QRTSVFDRIKP TT  SVF+R+SM   EEENQC  ST  R S F+RLS+ST +K R ST  FDRLK+  DQ QR+M +L+ K F EK
Subjt:  EEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK

TrEMBL top hitse value%identityAlignment
A0A5A7UA77 Retrotransposon gag protein2.6e-2061Show/hide
Query:  IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK
        +  EEV+NS +  QRTSVFDRIKPSTT  SVFQR+SM   EEENQC  STSTR S F+RL++ST +K R ST +FD LK+  DQ QR+M  L+ K+F EK
Subjt:  IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK

A0A5A7UM99 Ty3-gypsy retrotransposon protein3.4e-2058.18Show/hide
Query:  EKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMD
        E +N   SY    EE+DNS +  QRTSVFDRIKP TT  SVFQR+SM   +EEN+C  ST TR S F+RLS+ST +K R STFVFDRLK+  DQ QR+M 
Subjt:  EKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMD

Query:  NLEVKLFDEK
         L+ K F E+
Subjt:  NLEVKLFDEK

A0A5A7V1P3 Ty3-gypsy retrotransposon protein5.2e-2149.02Show/hide
Query:  KAIEEKDSQIAQLKSQIENQHIAESSQTQKKEKENFATSYC------------IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCS
        K I+ KD    Q +  I        S  +   KE    + C            +  EEVDNS +  QRT VFDRIKPSTT  SVFQR+SMV  EEENQC 
Subjt:  KAIEEKDSQIAQLKSQIENQHIAESSQTQKKEKENFATSYC------------IDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCS

Query:  VSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK
        +STST+ STF+RLS+ST +K R ST  FDRLK A DQ QR+M  L+ KLF E+
Subjt:  VSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK

A0A5D3BJM6 Uncharacterized protein2.6e-2059.26Show/hide
Query:  KEKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKM
        K   N+A+S     +E+DNS +  QRTSVFDRIKPSTT  SVFQR+SM   EEENQC   TSTR S F+RLS+STL+K + ST VFDRLK+  DQ QR+M
Subjt:  KEKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKM

Query:  DNLEVKLF
          L+ K F
Subjt:  DNLEVKLF

A0A5D3DIY2 Uncharacterized protein2.0e-2062.89Show/hide
Query:  EEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK
        EEVDNS K  QRTSVFDRIKP TT  SVF+R+SM   EEENQC  ST  R S F+RLS+ST +K R ST  FDRLK+  DQ QR+M +L+ K F EK
Subjt:  EEVDNSKKNGQRTSVFDRIKPSTTCPSVFQRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTGGCGGCGTCGGCGGGTGGCGTGCGGCAGAGAGGAAGAGAGAGCTGAGAGGGAGATAAGAGGGAGCCGACTTGATCTCAGACGGAGGGAGGTTGAATCTTCTAC
TTGTATCTTGATGAATAGACGGTTGATTCTTTGGAGTCTTCTAGTCGTCAGATCTTCTAAGTCTCGAGTTGGTCGAATTCTGAATCTTGGATCTTCTAAATTCTCTGGAA
ACTCTTTGACTTTTGAAGATTCTAGACTTTTGGAGAATGCTCTGGGCTCTGCATTCTGCCAAAAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAG
TATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGAT
GAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAATTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAAAAAAGGAAAAAGAAAACTTTG
CAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAATGGACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTTGTCCTTCGGTATTC
CAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCAGTGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATTGAGAAAAAGTCG
ATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAGCATACGATCAACCTCAAAGAAAGATGGATAACTTAGAGGTGAAACTGTTCGATGAAAAGCTGGTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTGGCGGCGTCGGCGGGTGGCGTGCGGCAGAGAGGAAGAGAGAGCTGAGAGGGAGATAAGAGGGAGCCGACTTGATCTCAGACGGAGGGAGGTTGAATCTTCTAC
TTGTATCTTGATGAATAGACGGTTGATTCTTTGGAGTCTTCTAGTCGTCAGATCTTCTAAGTCTCGAGTTGGTCGAATTCTGAATCTTGGATCTTCTAAATTCTCTGGAA
ACTCTTTGACTTTTGAAGATTCTAGACTTTTGGAGAATGCTCTGGGCTCTGCATTCTGCCAAAAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAG
TATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGAT
GAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAATTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAAAAAAGGAAAAAGAAAACTTTG
CAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAATGGACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTTGTCCTTCGGTATTC
CAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCAGTGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATTGAGAAAAAGTCG
ATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAGCATACGATCAACCTCAAAGAAAGATGGATAACTTAGAGGTGAAACTGTTCGATGAAAAGCTGGTTCCTTGA
Protein sequenceShow/hide protein sequence
MRWRRRRVACGREEERAEREIRGSRLDLRRREVESSTCILMNRRLILWSLLVVRSSKSRVGRILNLGSSKFSGNSLTFEDSRLLENALGSAFCQKTTLQGAYTNDKFLVK
YNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQTQKKEKENFATSYCIDVEEVDNSKKNGQRTSVFDRIKPSTTCPSVF
QRMSMVATEEENQCSVSTSTRPSTFQRLSVSTLRKSRSSTFVFDRLKVAYDQPQRKMDNLEVKLFDEKLVP