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Spg032377 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032377
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:34373854..34375515
RNA-Seq ExpressionSpg032377
SyntenySpg032377
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]3.6e-2350Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY
        MQSQPLQ+L +T      LFGLSY EG KR                         P+GNR SLQTGELDKTV                            
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY

Query:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
          LSTLSVLRDND VVEIELPVPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-2461.34Show/hide
Query:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE
        VESEA  G VG LIQ  TTFMK  PRGNR SLQT ELDKTV                              LSTLSVLRDNDAVVEIELPVPDTLPTS E
Subjt:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE

Query:  SSRSSSSTWLELYIESVHI
        S  S+SSTWLELY ESVH+
Subjt:  SSRSSSSTWLELYIESVHI

KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]3.2e-2450Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVG-----NLIQLSTTFMK-----------NW---PRGNRSSLQTGELDKTVSDKMNFENV
        MQS+PLQ+L +    L  LFGLSY EG K    S  L G +      +++++  +  K            W   PRGNR SLQTGELD T+S     E +
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVG-----NLIQLSTTFMK-----------NW---PRGNRSSLQTGELDKTVSDKMNFENV

Query:  LKRLDIEPEAIWYRVHTGYI-PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
          RL       +  V T  I  LSTLSVLRDND VVEIELPVPD LPTSAESS S+SSTWLELY ESVH+
Subjt:  LKRLDIEPEAIWYRVHTGYI-PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-2250.67Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY
        MQSQPLQ+L +T      LFGL Y EG KR                         PRGNR+SLQTGELDKTV                            
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY

Query:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
          LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLEL  E VH+
Subjt:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-2461.34Show/hide
Query:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE
        VESEA  G VG LIQ  TTFMK  PRGNR SLQT ELDKTV                              LSTLSVLRDNDAVVEIELPVPDTLPTS E
Subjt:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE

Query:  SSRSSSSTWLELYIESVHI
        S  S+SSTWLELY ESVH+
Subjt:  SSRSSSSTWLELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase1.6e-2461.34Show/hide
Query:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE
        VESEA  G VG LIQ  TTFMK  PRGNR SLQT ELDKTV                              LSTLSVLRDNDAVVEIELPVPDTLPTS E
Subjt:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE

Query:  SSRSSSSTWLELYIESVHI
        S  S+SSTWLELY ESVH+
Subjt:  SSRSSSSTWLELYIESVHI

A0A5A7THH5 Uncharacterized protein1.6e-2450Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVG-----NLIQLSTTFMK-----------NW---PRGNRSSLQTGELDKTVSDKMNFENV
        MQS+PLQ+L +    L  LFGLSY EG K    S  L G +      +++++  +  K            W   PRGNR SLQTGELD T+S     E +
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVG-----NLIQLSTTFMK-----------NW---PRGNRSSLQTGELDKTVSDKMNFENV

Query:  LKRLDIEPEAIWYRVHTGYI-PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
          RL       +  V T  I  LSTLSVLRDND VVEIELPVPD LPTSAESS S+SSTWLELY ESVH+
Subjt:  LKRLDIEPEAIWYRVHTGYI-PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7U9X4 DNA/RNA polymerases superfamily protein6.6e-2350.67Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY
        MQSQPLQ+L +T      LFGL Y EG KR                         PRGNR+SLQTGELDKTV                            
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY

Query:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
          LSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLEL  E VH+
Subjt:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5D3BV68 Reverse transcriptase1.6e-2461.34Show/hide
Query:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE
        VESEA  G VG LIQ  TTFMK  PRGNR SLQT ELDKTV                              LSTLSVLRDNDAVVEIELPVPDTLPTS E
Subjt:  VESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAE

Query:  SSRSSSSTWLELYIESVHI
        S  S+SSTWLELY ESVH+
Subjt:  SSRSSSSTWLELYIESVHI

A0A5D3DIM8 Uncharacterized protein1.7e-2350Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY
        MQSQPLQ+L +T      LFGLSY EG KR                         P+GNR SLQTGELDKTV                            
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGY

Query:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
          LSTLSVLRDND VVEIELPVPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  IPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTTATTTGGTTTGAGCTACACAGAAGGAATCAAGAGGTTAGTTGAATCAGAAGCTCT
ATTTGGTATGGTTGGAAATCTTATTCAATTATCTACAACGTTCATGAAGAATTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTG
ACAAAATGAATTTCGAAAATGTTCTTAAACGGTTAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGT
GACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCTAGTACGTGGTTGGAGTTGTATATTGAGTC
CGTGCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTTATTTGGTTTGAGCTACACAGAAGGAATCAAGAGGTTAGTTGAATCAGAAGCTCT
ATTTGGTATGGTTGGAAATCTTATTCAATTATCTACAACGTTCATGAAGAATTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTG
ACAAAATGAATTTCGAAAATGTTCTTAAACGGTTAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGT
GACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCTAGTACGTGGTTGGAGTTGTATATTGAGTC
CGTGCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRLVESEALFGMVGNLIQLSTTFMKNWPRGNRSSLQTGELDKTVSDKMNFENVLKRLDIEPEAIWYRVHTGYIPLSTLSVLR
DNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVL