; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032387 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032387
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:28819690..28821925
RNA-Seq ExpressionSpg032387
SyntenySpg032387
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.2e-1141.67Show/hide
Query:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDS----RFHFFR----------------PRGNRLGLQTRELAKT-----------------VE
        V+K N KLYL    I+  REPRI + C+   SGQ  W +     F F +                PRGNRL LQT EL KT                 VE
Subjt:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDS----RFHFFR----------------PRGNRLGLQTRELAKT-----------------VE

Query:  IKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI
        I+LP+ DTLP SAESS S+S S         + EDDV WLH +FR K AGG GG +
Subjt:  IKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0947.52Show/hide
Query:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD
        PRGNR  LQT EL KT                 VEI+LPMPDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GG 
Subjt:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD

Query:  I
        +
Subjt:  I

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.9e-1046.46Show/hide
Query:  DSRFHFFRPRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI
        + + +  RPRGNR  LQT +L KT                 VEI+LP+PDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GG +
Subjt:  DSRFHFFRPRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]5.8e-1135.39Show/hide
Query:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDSRFHFFR--------------PRGNRLGLQTRELAKT-----------------VEIKLPMP
        V+K N KLYL    I+  REPRI      G          F F +              PRGNR  LQT EL KT                 VEI+LP+P
Subjt:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDSRFHFFR--------------PRGNRLGLQTRELAKT-----------------VEIKLPMP

Query:  DTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGLGGDIKE
        DTLPTSAES  S+SS+  +                          EG    +  DDV WLH +FR K+AGG GG + E
Subjt:  DTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGLGGDIKE

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0947.52Show/hide
Query:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD
        PRGNR  LQT EL KT                 VEI+LPMPDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GG 
Subjt:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD

Query:  I
        +
Subjt:  I

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase6.9e-1047.52Show/hide
Query:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD
        PRGNR  LQT EL KT                 VEI+LPMPDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GG 
Subjt:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD

Query:  I
        +
Subjt:  I

A0A5A7VIY9 Uncharacterized protein2.8e-1135.39Show/hide
Query:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDSRFHFFR--------------PRGNRLGLQTRELAKT-----------------VEIKLPMP
        V+K N KLYL    I+  REPRI      G          F F +              PRGNR  LQT EL KT                 VEI+LP+P
Subjt:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDSRFHFFR--------------PRGNRLGLQTRELAKT-----------------VEIKLPMP

Query:  DTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGLGGDIKE
        DTLPTSAES  S+SS+  +                          EG    +  DDV WLH +FR K+AGG GG + E
Subjt:  DTLPTSAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGLGGDIKE

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.4e-1046.46Show/hide
Query:  DSRFHFFRPRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI
        + + +  RPRGNR  LQT +L KT                 VEI+LP+PDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GG +
Subjt:  DSRFHFFRPRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI

A0A5D3BSA6 Retrotrans_gag domain-containing protein5.7e-1241.67Show/hide
Query:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDS----RFHFFR----------------PRGNRLGLQTRELAKT-----------------VE
        V+K N KLYL    I+  REPRI + C+   SGQ  W +     F F +                PRGNRL LQT EL KT                 VE
Subjt:  VYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDS----RFHFFR----------------PRGNRLGLQTRELAKT-----------------VE

Query:  IKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI
        I+LP+ DTLP SAESS S+S S         + EDDV WLH +FR K AGG GG +
Subjt:  IKLPMPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDI

A0A5D3D150 Reverse transcriptase6.9e-1047.52Show/hide
Query:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD
        PRGNR  LQT EL KT                 VEI+LPMPDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GG 
Subjt:  PRGNRLGLQTRELAKT-----------------VEIKLPMPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGD

Query:  I
        +
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GAATCATAAGCTCTATTTGGTATGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGAATTTCTGGACAAATTGGTTGGGATTCTCGTT
TTCATTTCTTCAGGCCAAGAGGAAATAGGTTGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCAAGCTCCCGATGCCTGACACACTGCCAACGTCTGCTGAA
AGTTCCAGATCAAGCTCCAGTTCTACATTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGG
TCTGGGAGGGGACATAAAAGAGGATCAAGTTCAGGTGATAGCCAAAACGGTCTATAGTATAGGGATAGAGGTAGGGTACCTTATCTTGGGGACACTATGTGACTCGACCC
GCTTTGTATTTATTACAAACGATGTGATCCTGAATCGTTCATGTAAAGACATGCGAGTGGAGGCGTCCTATGCAAAGAGTTTACATAAGACCAGGACCGAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GAATCATAAGCTCTATTTGGTATGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGAATTTCTGGACAAATTGGTTGGGATTCTCGTT
TTCATTTCTTCAGGCCAAGAGGAAATAGGTTGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCAAGCTCCCGATGCCTGACACACTGCCAACGTCTGCTGAA
AGTTCCAGATCAAGCTCCAGTTCTACATTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGG
TCTGGGAGGGGACATAAAAGAGGATCAAGTTCAGGTGATAGCCAAAACGGTCTATAGTATAGGGATAGAGGTAGGGTACCTTATCTTGGGGACACTATGTGACTCGACCC
GCTTTGTATTTATTACAAACGATGTGATCCTGAATCGTTCATGTAAAGACATGCGAGTGGAGGCGTCCTATGCAAAGAGTTTACATAAGACCAGGACCGAGAAATAA
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFVQTRRISGVLWCFEHSGVYKLNHKLYLVWRKIKGSREPRICVVCVQGISGQIGWDSRFHFFRPRGNRLGLQTRELAKTVEIKLPMPDTLPTSAE
SSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGDIKEDQVQVIAKTVYSIGIEVGYLILGTLCDSTRFVFITNDVILNRSCKDMRVEASYAKSLHKTRTEK