; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032402 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032402
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:29534702..29538687
RNA-Seq ExpressionSpg032402
SyntenySpg032402
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]3.5e-3038.8Show/hide
Query:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGEA--LEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY
        + ++D ++KV+        ++  +   +F   +DS  EA  +E++  +  D  +   + +       +T    K E STS  K  ++ +EN S  P+LRY
Subjt:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGEA--LEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY

Query:  VPLSRRKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTS
        VPLSR KKGESPF E P+ +K    ++LKE +++     T+KGLGYKSPEP+RITRKGK KV D NHITV+EVD  + +E   QR S F RI P VAR  
Subjt:  VPLSRRKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTS

Query:  VFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        VF+R+ + E + +  Q T++  R S F+RL++    E+     S  T+ S
Subjt:  VFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]9.2e-3135.54Show/hide
Query:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGE--ALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY
        + ++D  +KV++       ++  +   +F   +DS  E  ++E+   +  D ++   + +      + T    K E ST+  K  ++ DE  S  P+LRY
Subjt:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGE--ALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY

Query:  VPLSRRKKGESPFTECPKSIK-------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVA
        VPLSRRKKGESPF E P+ +K                                           KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV 
Subjt:  VPLSRRKKGESPFTECPKSIK-------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVA

Query:  DINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        D NHITV+EVD  +E+E  +QR S F RI P VAR  VF+R+ + E + +  Q T++  R S F+RL++    E+    TS  T+ S
Subjt:  DINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]4.6e-3034.47Show/hide
Query:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSET-----DVKTSDLKKGETSTSLVKPKVVEDENC--SPVLR
        + ++D  +KV++       ++  +   +F        LE++         +D+    S  T       +T +  KGE  TS  K  +++DEN   +PVLR
Subjt:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSET-----DVKTSDLKKGETSTSLVKPKVVEDENC--SPVLR

Query:  YVPLSRRKKGESPFTECPKSIK-----------------------------------------------------------------------------K
        YVPLSRRKKGESPF E PK +K                                                                             K
Subjt:  YVPLSRRKKGESPFTECPKSIK-----------------------------------------------------------------------------K

Query:  KLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFR
        KLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT+EE D++  +E  +QR SVF RIRP VAR  VF+R+ + E E E  Q   S  R SVFR
Subjt:  KLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFR

Query:  RLSMFIGREESTLSTSDITQSS
        RL+    +EEST      T+ S
Subjt:  RLSMFIGREESTLSTSDITQSS

XP_031737557.1 uncharacterized protein LOC116402449 [Cucumis sativus]4.6e-3038.49Show/hide
Query:  ANSSETDVKTSDLKKGETSTSLVKPKVVEDENC-----SPVLRYVPLSRRKKGESPFTECPKSIK-----------------------------------
        A+      +T +  KGE  TS  K  +++DEN      + VLRYVPLSRRKKGESPF E PK +K                                   
Subjt:  ANSSETDVKTSDLKKGETSTSLVKPKVVEDENC-----SPVLRYVPLSRRKKGESPFTECPKSIK-----------------------------------

Query:  ------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQR
                                                  KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT+EE D++  +E  +QR
Subjt:  ------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQR

Query:  ASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
         SVF RIRP VAR  VF+R+ + E E E  Q   S  R SVFRRL+    +EEST      T+ S
Subjt:  ASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]1.2e-3038.27Show/hide
Query:  VDVVEDDDVPANSSET-----DVKTSDLKKGETSTSLVKPKVVEDENC--SPVLRYVPLSRRKKGESPFTECPKSIK-----------------------
        V  VE D  P + +E+     + +T +  KGE  TS  K  ++++EN   +PVLRYVPLSRRKKGESPF E PK +K                       
Subjt:  VDVVEDDDVPANSSET-----DVKTSDLKKGETSTSLVKPKVVEDENC--SPVLRYVPLSRRKKGESPFTECPKSIK-----------------------

Query:  ------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEV
                                                              KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT+EE 
Subjt:  ------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEV

Query:  DDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        D++  +E  +QR SVF RIRP VAR  VF+R+ + E E E  Q   +  R SVFRRL+    +EEST      T+ S
Subjt:  DDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein2.2e-3038.96Show/hide
Query:  DSKRKVKSQRKKGKRSQGEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCSP--VLRYVPLSRRKK
        +SK  ++   +  +R   E F  +  +  +   +EI   +  D ++   + +      + T   +KGE STS  K  ++ DE  S   +LRYVPLSRR+K
Subjt:  DSKRKVKSQRKKGKRSQGEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCSP--VLRYVPLSRRKK

Query:  GESPFTECPKSIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSV
        GESPF + P+ +K             KKLL+EG+ +P +RKG GYKSPEP+ I RK K KV D NHITV EVD  +E+E   QR S F +IRP V RT+V
Subjt:  GESPFTECPKSIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSV

Query:  FQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        F+R+ V +TE +  Q T+S  + S  +RL+M   +E+ T      T+ S
Subjt:  FQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

A0A5A7UMY2 Reverse transcriptase domain-containing protein4.5e-3135.54Show/hide
Query:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGE--ALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY
        + ++D  +KV++       ++  +   +F   +DS  E  ++E+   +  D ++   + +      + T    K E ST+  K  ++ DE  S  P+LRY
Subjt:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGE--ALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY

Query:  VPLSRRKKGESPFTECPKSIK-------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVA
        VPLSRRKKGESPF E P+ +K                                           KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV 
Subjt:  VPLSRRKKGESPFTECPKSIK-------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVA

Query:  DINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        D NHITV+EVD  +E+E  +QR S F RI P VAR  VF+R+ + E + +  Q T++  R S F+RL++    E+    TS  T+ S
Subjt:  DINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.3e-2727.86Show/hide
Query:  SQEKYDSIEDEKEGWTLVVRRKKQKQSYTRKESRLFRDSKRKVKSQRKKGKR----------------------SQGEYFPRRFLDDSQGEALEIVT---
        SQEK   IE++ EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K K+                      +  ++FP RFL D Q E   +V    
Subjt:  SQEKYDSIEDEKEGWTLVVRRKKQKQSYTRKESRLFRDSKRKVKSQRKKGKR----------------------SQGEYFPRRFLDDSQGEALEIVT---

Query:  --------------CHIVDVVEDD----------------------------------------------------------------------------
                      C  +D  ++D                                                                            
Subjt:  --------------CHIVDVVEDD----------------------------------------------------------------------------

Query:  -----------DVPANSSETDVKTSDLK--------------KGETSTSLVKPKVVEDENCS--PVLRYVPLSRRKKGESPFTECPKSIK----------
                   +VP  + E +++   L               K E STS  K  +V DE  S  P+LRYVPLSRRKKGESPF E P+ +K          
Subjt:  -----------DVPANSSETDVKTSDLK--------------KGETSTSLVKPKVVEDENCS--PVLRYVPLSRRKKGESPFTECPKSIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKA
                                                                           KKLL+EG+++P +RKGLGYK PEP+RITRKGK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKA

Query:  KVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTL
        KV D NHITV+EVD  +E+E   QR S F R+ P VAR  VF+R+ + E E +  Q T+S  R S F+RL+M    E+ +L
Subjt:  KVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTL

A0A5D3C8N8 Ribonuclease H1.7e-3038.8Show/hide
Query:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGEA--LEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY
        + ++D ++KV+        ++  +   +F   +DS  EA  +E++  +  D  +   + +       +T    K E STS  K  ++ +EN S  P+LRY
Subjt:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGEA--LEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY

Query:  VPLSRRKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTS
        VPLSR KKGESPF E P+ +K    ++LKE +++     T+KGLGYKSPEP+RITRKGK KV D NHITV+EVD  + +E   QR S F RI P VAR  
Subjt:  VPLSRRKKGESPFTECPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTS

Query:  VFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        VF+R+ + E + +  Q T++  R S F+RL++    E+     S  T+ S
Subjt:  VFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.4e-2934.68Show/hide
Query:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGE--ALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY
        + ++D  +KV+         +  +   +F   +DS  E  +LE+   +  D ++   + +      + T    K E ST+  K  ++ DE  S  P+LRY
Subjt:  RLFRDSKRKVKSQRKKGKRSQGEYFPRRFL--DDSQGE--ALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETSTSLVKPKVVEDENCS--PVLRY

Query:  VPLSRRKKGESPFTECPKSIK-----------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVR
        VPLSRRKKGESPF E P+ +K                                                     KKLL+EG+ +P +RKGLGYKSPEP+R
Subjt:  VPLSRRKKGESPFTECPKSIK-----------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVR

Query:  ITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS
        ITRKGK KV D NHITV+EVD  +E+E  +QR S F RI P VAR  VF+R+ + E E +  Q T++  + S F+RL++    E+    TS  T+ S
Subjt:  ITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPVARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATTGAAGATGAGAAAGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACACACGAAAAGAGTCCCG
CCTATTTCGAGACAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGAAAAAGAAGTCAAGGAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCAC
TTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAATTCCTCGGAAACGGATGTGAAGACATCTGACCTGAAAAAGGGTGAAACATCT
ACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAACTGTTCACCTGTCCTACGATATGTCCCTTTATCCCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCC
AAAAAGCATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCAGTTCGCATAACAAGAAAAGGGAAGG
CGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTT
GCTCGTACTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTT
CATTGGGAGAGAAGAGAGTACACTTTCAACTTCGGATATCACGCAGTCTTCCCTACTATCCTCCGGGCCAAGAACGACTTGTGGGAGTCTATATAAGATAGAGAATGGGA
AGGGAATGCTTGAAGGATCAAGCTATGGAGAAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATTGAAGATGAGAAAGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACACACGAAAAGAGTCCCG
CCTATTTCGAGACAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGAAAAAGAAGTCAAGGAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCAC
TTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAATTCCTCGGAAACGGATGTGAAGACATCTGACCTGAAAAAGGGTGAAACATCT
ACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAACTGTTCACCTGTCCTACGATATGTCCCTTTATCCCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCC
AAAAAGCATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCAGTTCGCATAACAAGAAAAGGGAAGG
CGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTT
GCTCGTACTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTT
CATTGGGAGAGAAGAGAGTACACTTTCAACTTCGGATATCACGCAGTCTTCCCTACTATCCTCCGGGCCAAGAACGACTTGTGGGAGTCTATATAAGATAGAGAATGGGA
AGGGAATGCTTGAAGGATCAAGCTATGGAGAAGTATGA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIEDEKEGWTLVVRRKKQKQSYTRKESRLFRDSKRKVKSQRKKGKRSQGEYFPRRFLDDSQGEALEIVTCHIVDVVEDDDVPANSSETDVKTSDLKKGETS
TSLVKPKVVEDENCSPVLRYVPLSRRKKGESPFTECPKSIKKKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRRIRPPV
ARTSVFQRIIVNETEEESAQPTNSSTRSSVFRRLSMFIGREESTLSTSDITQSSLLSSGPRTTCGSLYKIENGKGMLEGSSYGEV