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Spg032408 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032408
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold2:28826615..28840124
RNA-Seq ExpressionSpg032408
SyntenySpg032408
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]1.5e-0565.22Show/hide
Query:  VVFALVPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VV   +  VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VVFALVPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-0563.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
KAA0047518.1 gag-protease polyprotein [Cucumis melo var. makuwa]3.3e-0853.33Show/hide
Query:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSILCDYVPSSPLGL---VPK-MDTPTRM
        +NN F VQP N NPSRA+E+VGP VQD ++ LKGT     +   GVN  L  YVPS PLG+    PK  D PTR+
Subjt:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSILCDYVPSSPLGL---VPK-MDTPTRM
KAA0056736.1 hypothetical protein E6C27_scaffold486G00080 [Cucumis melo var. makuwa]1.5e-0558Show/hide
Query:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSIL
        +NN F VQP N+NPSRA+E+VGP VQD +  LKGT     + R GVNS+L
Subjt:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSIL
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.1e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class7.4e-0665.22Show/hide
Query:  VVFALVPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VV   +  VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VVFALVPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein7.4e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein3.9e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5D3DC35 Uncharacterized protein7.4e-0658Show/hide
Query:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSIL
        +NN F VQP N+NPSRA+E+VGP VQD +  LKGT     + R GVNS+L
Subjt:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSIL
A0A5D3DRY2 Gag-protease polyprotein1.6e-0853.33Show/hide
Query:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSILCDYVPSSPLGL---VPK-MDTPTRM
        +NN F VQP N NPSRA+E+VGP VQD ++ LKGT     +   GVN  L  YVPS PLG+    PK  D PTR+
Subjt:  MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSILCDYVPSSPLGL---VPK-MDTPTRM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACCTGTTTGTGGTCCAACCATCAAACATAAACCCTTCTCGGGCCAGTGAGAGGGTAGGGCCCTTTGTTCAAGACCCGGAGACACCACTTAAGGGAACACTCAT
CTACTTCCTCAAAAGTCGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGATACCCCCACTCGCATGTCTACTA
CATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCA
AAGCAATCAAGAATCATTCTTGATTTTCAGAGACGTCAACGGAGTGTAACGCTCCCACTTTCAGATCCCAGAGATCAGGCCCTCCGAAGGGATGGTCGCTTCCAGGGCGA
CACGCGGGCGGATCATAAAAATCGGACGGTGCGACTTAGGGGTGGTGACCGTAGGATACGTTTGTTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATCTGTGATTA
CGGACACTCGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTGTACAGTCCATTAGGTCCCCCTGCTAGCTCGGTAGCCTCGTGGTGGTGT
CCGTTGAAGTATTCAGAGTCGTCTACGGAGAATTTGCAAAATTTCGTTGATTTGATCGATGTAAGGGCCCGTGTTTTGGGCGTTTTGTTGCAAATTAGTGTCTGTAAGTT
GGTGTCAAAGAATTTTGTATCAATTTGGGTGAAATCGATGCAATTTGAGACCAATATGAATGCAAATCGCCGCTGGAATTGTAATTTTCTGGAAAAGCTAGATGAAGAAA
TCCCAAAAAACAGAAGCAAATCACGAAACACTAAAAACAAAATCAAGAAAACGGACGAAATTGCATCTGTTAGGGCTCGAACTCAAGGCGTGAGGGGGCTGTTTGCATCA
GTTCACCAACCGCTAGGTGACGGATGTTGGCGTTCGACTGGAGCGTGTGTCTTCGGCTTCGAGGGCAGCAGTTCGAGCAACAGTTCACGCAATTGTTTTTTTCCAATTCG
CGTGCGCGTGTTTCTGATCGTGGAGCGGCAGTGTGAACGCGTCATCGTGGCGATGGTTAACCGGTTCGCGCGAATGTTGACCCGGTTCACGTGGTCTGGGAAGTTCTTGG
GCCGGTTCAAATTTGATTGGATTATTTGTGATGGGGATAAGGCTGAGAACCTTATCCTGGTGACACTATGCGATACGGCCCGCCTTGTATTCGATATTGATGCAATGATC
CAAAGCATCCATGTAGGAGATATGCAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCCACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACAT
AACGAGAATTCCCCTCAAGGCTTCCTCTAGACTCCCCCCAGTCTCCTGCCTCTATAAGTCTCAGAGTCATACCGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCCAT
GGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCGCTT
CTAGGAGAAGTAGATGAGTCTGTGATTACGGACAATCGTGAAGGATTGACCTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGC
TGTGGGTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAACCTGTTTGTGGTCCAACCATCAAACATAAACCCTTCTCGGGCCAGTGAGAGGGTAGGGCCCTTTGTTCAAGACCCGGAGACACCACTTAAGGGAACACTCAT
CTACTTCCTCAAAAGTCGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGATACCCCCACTCGCATGTCTACTA
CATGGACGCTTTGGATCAATACGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGTGTTACCAGGATAAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCA
AAGCAATCAAGAATCATTCTTGATTTTCAGAGACGTCAACGGAGTGTAACGCTCCCACTTTCAGATCCCAGAGATCAGGCCCTCCGAAGGGATGGTCGCTTCCAGGGCGA
CACGCGGGCGGATCATAAAAATCGGACGGTGCGACTTAGGGGTGGTGACCGTAGGATACGTTTGTTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATCTGTGATTA
CGGACACTCGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTGTACAGTCCATTAGGTCCCCCTGCTAGCTCGGTAGCCTCGTGGTGGTGT
CCGTTGAAGTATTCAGAGTCGTCTACGGAGAATTTGCAAAATTTCGTTGATTTGATCGATGTAAGGGCCCGTGTTTTGGGCGTTTTGTTGCAAATTAGTGTCTGTAAGTT
GGTGTCAAAGAATTTTGTATCAATTTGGGTGAAATCGATGCAATTTGAGACCAATATGAATGCAAATCGCCGCTGGAATTGTAATTTTCTGGAAAAGCTAGATGAAGAAA
TCCCAAAAAACAGAAGCAAATCACGAAACACTAAAAACAAAATCAAGAAAACGGACGAAATTGCATCTGTTAGGGCTCGAACTCAAGGCGTGAGGGGGCTGTTTGCATCA
GTTCACCAACCGCTAGGTGACGGATGTTGGCGTTCGACTGGAGCGTGTGTCTTCGGCTTCGAGGGCAGCAGTTCGAGCAACAGTTCACGCAATTGTTTTTTTCCAATTCG
CGTGCGCGTGTTTCTGATCGTGGAGCGGCAGTGTGAACGCGTCATCGTGGCGATGGTTAACCGGTTCGCGCGAATGTTGACCCGGTTCACGTGGTCTGGGAAGTTCTTGG
GCCGGTTCAAATTTGATTGGATTATTTGTGATGGGGATAAGGCTGAGAACCTTATCCTGGTGACACTATGCGATACGGCCCGCCTTGTATTCGATATTGATGCAATGATC
CAAAGCATCCATGTAGGAGATATGCAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAATCCCACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACAT
AACGAGAATTCCCCTCAAGGCTTCCTCTAGACTCCCCCCAGTCTCCTGCCTCTATAAGTCTCAGAGTCATACCGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCCAT
GGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCGCTT
CTAGGAGAAGTAGATGAGTCTGTGATTACGGACAATCGTGAAGGATTGACCTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGC
TGTGGGTCTTTAG
Protein sequenceShow/hide protein sequence
MNNLFVVQPSNINPSRASERVGPFVQDPETPLKGTLIYFLKSREGVNSILCDYVPSSPLGLVPKMDTPTRMSTTWTLWINTSVSNTKRAVSHSVTRISGEDQMVVFFVVA
KQSRIILDFQRRQRSVTLPLSDPRDQALRRDGRFQGDTRADHKNRTVRLRGGDRRIRLFGFYALKLVDSESVITDTREGLTYRHRSTSMDTEMLYSPLGPPASSVASWWC
PLKYSESSTENLQNFVDLIDVRARVLGVLLQISVCKLVSKNFVSIWVKSMQFETNMNANRRWNCNFLEKLDEEIPKNRSKSRNTKNKIKKTDEIASVRARTQGVRGLFAS
VHQPLGDGCWRSTGACVFGFEGSSSSNSSRNCFFPIRVRVFLIVERQCERVIVAMVNRFARMLTRFTWSGKFLGRFKFDWIICDGDKAENLILVTLCDTARLVFDIDAMI
QSIHVGDMQICMGESGQFADSIIPPFQGQDRMGAGNITRIPLKASSRLPPVSCLYKSQSHTGVAIVVVFALVPWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPL
LGEVDESVITDNREGLTYRHRSTSMDTEMFYSEKSSAVGL