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Spg032414 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032414
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold2:31139998..31141262
RNA-Seq ExpressionSpg032414
SyntenySpg032414
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.8e-0741.73Show/hide
Query:  MTEILSPRLDGTVCTQVEIEFPVPDKLPKSAKS----FPIKLQFIFQSE----FC------QAALHVCLMVFKDSA-------VLYVESVQIELEEYGPS
        MTEILS RL GTVCTQV+IE P+PD LP SA+S    F   L+  F+S     FC       + LH+   V   S        V ++ +V  +     P 
Subjt:  MTEILSPRLDGTVCTQVEIEFPVPDKLPKSAKS----FPIKLQFIFQSE----FC------QAALHVCLMVFKDSA-------VLYVESVQIELEEYGPS

Query:  ------MDKRVMPPRTSRRHRQNQDGT
                 RVMPPRTSRR RQNQ+ T
Subjt:  ------MDKRVMPPRTSRRHRQNQDGT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-0538.98Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD
        MTEILSPRL GTVCTQ                 VEIE PVPD LP SA+S         +   EF    +     + ++  V ++ +V       GP   
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD

Query:  KRVMPPRTSRRHRQNQDG
          VMPP TS+R R NQDG
Subjt:  KRVMPPRTSRRHRQNQDG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.7e-0538.71Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSA-------VLYVESVQIELEEY
        MTEILS RL GTVCTQ                 VEIE PVPD LP S +S      +   +    + LH+   +  +S        V ++ +V       
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSA-------VLYVESVQIELEEY

Query:  GPSMDKRVMPPRTSRRHRQNQDGT
        GP     VMPPRTSRRH+QNQD T
Subjt:  GPSMDKRVMPPRTSRRHRQNQDGT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-0538.98Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD
        MTEILSPRL GTVCTQ                 VEIE PVPD LP SA+S         +   EF    +     + ++  V ++ +V       GP   
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD

Query:  KRVMPPRTSRRHRQNQDG
          VMPP TS+R R NQDG
Subjt:  KRVMPPRTSRRHRQNQDG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein8.6e-0841.73Show/hide
Query:  MTEILSPRLDGTVCTQVEIEFPVPDKLPKSAKS----FPIKLQFIFQSE----FC------QAALHVCLMVFKDSA-------VLYVESVQIELEEYGPS
        MTEILS RL GTVCTQV+IE P+PD LP SA+S    F   L+  F+S     FC       + LH+   V   S        V ++ +V  +     P 
Subjt:  MTEILSPRLDGTVCTQVEIEFPVPDKLPKSAKS----FPIKLQFIFQSE----FC------QAALHVCLMVFKDSA-------VLYVESVQIELEEYGPS

Query:  ------MDKRVMPPRTSRRHRQNQDGT
                 RVMPPRTSRR RQNQ+ T
Subjt:  ------MDKRVMPPRTSRRHRQNQDGT

A0A5A7VMG9 Reverse transcriptase1.4e-0538.98Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD
        MTEILSPRL GTVCTQ                 VEIE PVPD LP SA+S         +   EF    +     + ++  V ++ +V       GP   
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD

Query:  KRVMPPRTSRRHRQNQDG
          VMPP TS+R R NQDG
Subjt:  KRVMPPRTSRRHRQNQDG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein8.1e-0638.71Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSA-------VLYVESVQIELEEY
        MTEILS RL GTVCTQ                 VEIE PVPD LP S +S      +   +    + LH+   +  +S        V ++ +V       
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSA-------VLYVESVQIELEEY

Query:  GPSMDKRVMPPRTSRRHRQNQDGT
        GP     VMPPRTSRRH+QNQD T
Subjt:  GPSMDKRVMPPRTSRRHRQNQDGT

A0A5D3CU23 Retrotrans_gag domain-containing protein5.8e-0439.34Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPS----
        MTEILS RL GTVCTQ                 VEIE PV D LP SA+S         +S    A       + +   V ++ SV       GP     
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPS----

Query:  --MDKRVMPPRTSRRHRQNQDG
             RVMP RTSRR RQNQDG
Subjt:  --MDKRVMPPRTSRRHRQNQDG

A0A5D3DX39 Reverse transcriptase1.4e-0538.98Show/hide
Query:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD
        MTEILSPRL GTVCTQ                 VEIE PVPD LP SA+S         +   EF    +     + ++  V ++ +V       GP   
Subjt:  MTEILSPRLDGTVCTQ-----------------VEIEFPVPDKLPKSAKSFPIKLQFIFQ--SEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMD

Query:  KRVMPPRTSRRHRQNQDG
          VMPP TS+R R NQDG
Subjt:  KRVMPPRTSRRHRQNQDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTAGATGGTACCGTGTGCACACAGGTAGAGATTGAGTTCCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAA
GCTCCAGTTTATTTTCCAAAGCGAGTTTTGTCAGGCTGCGCTTCATGTATGTCTAATGGTTTTCAAGGATTCCGCTGTGTTGTACGTTGAGTCAGTTCAGATAGAACTGG
AAGAGTATGGTCCAAGTATGGATAAGAGAGTCATGCCACCACGTACCAGCAGACGACACAGGCAGAATCAAGACGGGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTAGATGGTACCGTGTGCACACAGGTAGAGATTGAGTTCCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAA
GCTCCAGTTTATTTTCCAAAGCGAGTTTTGTCAGGCTGCGCTTCATGTATGTCTAATGGTTTTCAAGGATTCCGCTGTGTTGTACGTTGAGTCAGTTCAGATAGAACTGG
AAGAGTATGGTCCAAGTATGGATAAGAGAGTCATGCCACCACGTACCAGCAGACGACACAGGCAGAATCAAGACGGGACGTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLDGTVCTQVEIEFPVPDKLPKSAKSFPIKLQFIFQSEFCQAALHVCLMVFKDSAVLYVESVQIELEEYGPSMDKRVMPPRTSRRHRQNQDGT