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Spg032422 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032422
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold2:30357512..30359211
RNA-Seq ExpressionSpg032422
SyntenySpg032422
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]3.5e-1464.62Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFFDHK
        M L+NATLS+EAL Y VGC S  Q W+ +E+HYSSN+RTNIVNLK DLQ I+KKP  PIG +  K
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFFDHK

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]3.2e-1275.93Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK
        MTL+NATLS EALAY V   + KQ WEV+EKHYSSNSRTN+VNLK DLQSI KK
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK

XP_022157455.1 uncharacterized protein LOC111024149 [Momordica charantia]4.0e-1068.52Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK
        MTL+NATLS  A AY VG  S K+ W+ +EKHYSS+SRTN+VNLK DLQSI+KK
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK

XP_022158689.1 uncharacterized protein LOC111025150 [Momordica charantia]2.7e-1162.9Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF
        MTL+NA LS  ALAY VGC S +Q W+ + KHYSS+SRTN+VNLK DLQSI+KKP   I  +
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF

XP_022159298.1 uncharacterized protein LOC111025709 [Momordica charantia]1.0e-1061.29Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF
        MTL+NATLS  ALAY VGC S +Q W+ + K+YSS+SRTN+VNLK +LQSI+KKP   I  +
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF

TrEMBL top hitse value%identityAlignment
A0A5D3D3T6 Retrotran_gag_3 domain-containing protein1.7e-1464.62Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFFDHK
        M L+NATLS+EAL Y VGC S  Q W+ +E+HYSSN+RTNIVNLK DLQ I+KKP  PIG +  K
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFFDHK

A0A6J1D9L6 uncharacterized protein LOC1110188921.6e-1275.93Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK
        MTL+NATLS EALAY V   + KQ WEV+EKHYSSNSRTN+VNLK DLQSI KK
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK

A0A6J1DT57 uncharacterized protein LOC1110241491.9e-1068.52Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK
        MTL+NATLS  A AY VG  S K+ W+ +EKHYSS+SRTN+VNLK DLQSI+KK
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKK

A0A6J1DYF1 uncharacterized protein LOC1110257095.0e-1161.29Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF
        MTL+NATLS  ALAY VGC S +Q W+ + K+YSS+SRTN+VNLK +LQSI+KKP   I  +
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF

A0A6J1E049 uncharacterized protein LOC1110251501.3e-1162.9Show/hide
Query:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF
        MTL+NA LS  ALAY VGC S +Q W+ + KHYSS+SRTN+VNLK DLQSI+KKP   I  +
Subjt:  MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTGGTCAATGCCACTTTGTCGCTGGAAGCCTTAGCCTATGATGTTGGTTGCGCATCATTCAAACAAGCTTGGGAGGTCATTGAAAAGCATTACTCTTCGAACTC
AAGAACCAACATTGTCAATCTAAAGTTAGATCTTCAATCAATAACCAAGAAGCCAACTACACCGATTGGTTTCTTTGATCACAAACGGGTTGTAGATGACCACGAGTGTC
TTCCCCGCTATCCTCCGACCTTAGAACGGCTTGTGGGAGCAAAAAATGTGATTAATTTTGGGAGAGAAAGGTCGTTCGTAACTACAGCTAGGTCAAATGTCCGTTTTATC
CCTGAAGTTACCTCTTGTTCCTTAAATCCCACTGATCCTCTAATGAACAATTGGATGGGTAAAGCTGAAACGGGTCCAATAAAGAATGGGTCAACACCGATTAATGCAAT
AATCTCAATTGGAACTCAAGAAGAAACTCACCCAATGAAGCAATTCCTTATGCTGGGCAGCAACTTGAATAATGGTCGATACTCGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACTGGTCAATGCCACTTTGTCGCTGGAAGCCTTAGCCTATGATGTTGGTTGCGCATCATTCAAACAAGCTTGGGAGGTCATTGAAAAGCATTACTCTTCGAACTC
AAGAACCAACATTGTCAATCTAAAGTTAGATCTTCAATCAATAACCAAGAAGCCAACTACACCGATTGGTTTCTTTGATCACAAACGGGTTGTAGATGACCACGAGTGTC
TTCCCCGCTATCCTCCGACCTTAGAACGGCTTGTGGGAGCAAAAAATGTGATTAATTTTGGGAGAGAAAGGTCGTTCGTAACTACAGCTAGGTCAAATGTCCGTTTTATC
CCTGAAGTTACCTCTTGTTCCTTAAATCCCACTGATCCTCTAATGAACAATTGGATGGGTAAAGCTGAAACGGGTCCAATAAAGAATGGGTCAACACCGATTAATGCAAT
AATCTCAATTGGAACTCAAGAAGAAACTCACCCAATGAAGCAATTCCTTATGCTGGGCAGCAACTTGAATAATGGTCGATACTCGACTTGA
Protein sequenceShow/hide protein sequence
MTLVNATLSLEALAYDVGCASFKQAWEVIEKHYSSNSRTNIVNLKLDLQSITKKPTTPIGFFDHKRVVDDHECLPRYPPTLERLVGAKNVINFGRERSFVTTARSNVRFI
PEVTSCSLNPTDPLMNNWMGKAETGPIKNGSTPINAIISIGTQEETHPMKQFLMLGSNLNNGRYST