; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032437 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032437
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:31691050..31700994
RNA-Seq ExpressionSpg032437
SyntenySpg032437
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-2546.7Show/hide
Query:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI
        +STGFSSKPGG LVFS  LSIL                        C+                        S + +   PRG+R SLQT ++DKT    
Subjt:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES
                 PLSTLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELPVPD LPTSAESSRS+SSTWLELY ES
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.1e-3245.96Show/hide
Query:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL
        +  ST FSSKPG  LVFS  LSIL    +++    +WPRG+RSSLQTG+LDKT              LSTLSVLRDNDAVVSAG     +       APL
Subjt:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL

Query:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS
        HRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +          WL +   + T  +  PGGS+ +  G++    C  
Subjt:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS

Query:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP
                 G ++SL  G L K   +       LP
Subjt:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.4e-3245.96Show/hide
Query:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL
        +  ST FSSKPG  LVFS  LSIL    +++    +WPRG+RSSLQTG+LDKT              LSTLSVLRDNDAVVSAG     +       APL
Subjt:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL

Query:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS
        HRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +          WL +   + T  +  PGGS+ +  G++    C  
Subjt:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS

Query:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP
                 G ++SL  G L K   +       LP
Subjt:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-2546.7Show/hide
Query:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI
        +STGFSSKPGG LVFS  LSIL                        C+                        S + +   PRG+R SLQT ++DKT    
Subjt:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES
                 PLSTLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELPVPD LPTSAESSRS+SSTWLELY ES
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-1746.63Show/hide
Query:  QESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKT------PEAIWYR----VHTGYI-PLSTLSVLRDNDAVVSAGRAPLRQ
        ++STGFSSKPGG LVFS  LSIL    +++    IWPR +R SLQTG+LDKT       E +  R    V T  I PLSTLSVLRDNDAV          
Subjt:  QESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKT------PEAIWYR----VHTGYI-PLSTLSVLRDNDAVVSAGRAPLRQ

Query:  RRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE
                                        VEIELPVPDTLP+S ES  S+SSTWLELY E
Subjt:  RRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.3e-2646.7Show/hide
Query:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI
        +STGFSSKPGG LVFS  LSIL                        C+                        S + +   PRG+R SLQT ++DKT    
Subjt:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES
                 PLSTLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELPVPD LPTSAESSRS+SSTWLELY ES
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES

A0A5A7VGQ5 Uncharacterized protein5.3e-3345.96Show/hide
Query:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL
        +  ST FSSKPG  LVFS  LSIL    +++    +WPRG+RSSLQTG+LDKT              LSTLSVLRDNDAVVSAG     +       APL
Subjt:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL

Query:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS
        HRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +          WL +   + T  +  PGGS+ +  G++    C  
Subjt:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS

Query:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP
                 G ++SL  G L K   +       LP
Subjt:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP

A0A5D3BG85 Uncharacterized protein7.0e-3345.96Show/hide
Query:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL
        +  ST FSSKPG  LVFS  LSIL    +++    +WPRG+RSSLQTG+LDKT              LSTLSVLRDNDAVVSAG     +       APL
Subjt:  NQESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPL

Query:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS
        HRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +          WL +   + T  +  PGGS+ +  G++    C  
Subjt:  HRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSST----------WLELYIESSTGFSSKPGGSLVF-SGVLSILGCPS

Query:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP
                 G ++SL  G L K   +       LP
Subjt:  RIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLP

A0A5D3BTP3 Reverse transcriptase6.3e-2646.7Show/hide
Query:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI
        +STGFSSKPGG LVFS  LSIL                        C+                        S + +   PRG+R SLQT ++DKT    
Subjt:  ESTGFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIWPRGSRSSLQTGKLDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES
                 PLSTLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELPVPD LPTSAESSRS+SSTWLELY ES
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIES

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein4.8e-1846.63Show/hide
Query:  QESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKT------PEAIWYR----VHTGYI-PLSTLSVLRDNDAVVSAGRAPLRQ
        ++STGFSSKPGG LVFS  LSIL    +++    IWPR +R SLQTG+LDKT       E +  R    V T  I PLSTLSVLRDNDAV          
Subjt:  QESTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIWPRGSRSSLQTGKLDKT------PEAIWYR----VHTGYI-PLSTLSVLRDNDAVVSAGRAPLRQ

Query:  RRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE
                                        VEIELPVPDTLP+S ES  S+SSTWLELY E
Subjt:  RRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAAGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCC
AAGAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCC
GTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGCCCCACTGCATCGTAGGACTAGTAAACGTTGGTTGTACTGG
GCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTT
GGAGTTGTATATTGAGTCCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTCCAAGTCGAATCAGAAGCTCTA
TTTGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGA
TCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGGGTTTAGAATAACCGCTACCGTAGGGCAGTCAGCTACTCCTCCTCTGAATCGAGACAATCTCGGCCAAAT
ACTATTCCCAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAAGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCC
AAGAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCC
GTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGCCCCACTGCATCGTAGGACTAGTAAACGTTGGTTGTACTGG
GCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTT
GGAGTTGTATATTGAGTCCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTCCAAGTCGAATCAGAAGCTCTA
TTTGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGA
TCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGGGTTTAGAATAACCGCTACCGTAGGGCAGTCAGCTACTCCTCCTCTGAATCGAGACAATCTCGGCCAAAT
ACTATTCCCAGAATAA
Protein sequenceShow/hide protein sequence
MNQESTGFSSKPGGSLVFSGVLSILGCTSRIRSSIWPRGSRSSLQTGKLDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYW
ACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESSTGFSSKPGGSLVFSGVLSILGCPSRIRSSIWPRGSRSSLQTGKLDKTVEIELPVPDTLPTSAESSR
SSSSTWLELYIESGFRITATVGQSATPPLNRDNLGQILFPE