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Spg032454 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032454
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold2:28718490..28728021
RNA-Seq ExpressionSpg032454
SyntenySpg032454
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.2e-0549.21Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHEESDVATCRTGEIQGSA
        GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP  R  L+    E      C +  +   A
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHEESDVATCRTGEIQGSA
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]7.6e-0765.22Show/hide
Query:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHE
        ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R + + ++ E
Subjt:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-0776.32Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.6e-0549.21Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHEESDVATCRTGEIQGSA
        GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP  R  L+    E      C +  +   A
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHEESDVATCRTGEIQGSA
A0A5A7U2P4 Integrase catalytic domain-containing protein3.7e-0765.22Show/hide
Query:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHE
        ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R + + ++ E
Subjt:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHE
A0A5D3C3J6 Gag/pol protein1.3e-0776.32Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGA
CTCTAGGATTCTTCTAGAAGGTAACTTGCATGAAGAGTCTGATGTTGCCACGTGTCGCACAGGGGAAATCCAAGGGTCAGCTGAAGAAATTTTGCCCGGACAAAGGGAAG
ACAAGGGCAAAGGTATTGCTGAAGCATCGCCGGAACCTGAAGATAGTGAAGCAGAGGAGCCACGGTTGCCGTATAACCGCTTCATCAACAATCTTGCTCGATCAAAGTAT
GTCGAGATGCTGAGAAGAGACTTTTTGTTTGAGTGTGGGTTTGGCGATGAGCTGCCACGGTTCTTGAGGACTGGAATAGCGAACCATGGCTGGAGTCAGTTCTGTGCAAT
GCAGGAGCCGGTCAATTCCAACATTGTCCGTCCATTAGGTCCCCCTGCTAGCTCCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATTAAGAATCATGT
CCGTTGAAGTATTCAGAGTCGTCAACGGAGTGGTATCAGAGCCATGCCCCAGGCGTAGCCGTGTCGGGTGGAATCCTCGGGTGCCGCACAAAGAAGTTGTGAGCCTTGAT
AGTAATGGTGGAGATCCGTTGTTGAGCTTTGGGCAGGCGGGTATACTCCGGAGAAGAGGAGTCATCCTGGATAAGAGCAAACTCTCGAAAAACAGAGGAAAAGCTGGAAT
TCCCCAGAAATGCGACCGCATTTCTGGGAAGGCAAAAGTGAAATGCGACCGCATTTCTGCAAAAACCGAGACCGTTCGAGTCGTCCGTGGCACCTATTTCGCAGCTCCTC
AACCATCTTCTACACTATATAAGCTCGAGATTCGAAGTCAAATCCAAGCAGAACTCACTTGGAAGAAAAGGGTGGTGACAGAACCCTGGCTCGACGCCAATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGA
CTCTAGGATTCTTCTAGAAGGTAACTTGCATGAAGAGTCTGATGTTGCCACGTGTCGCACAGGGGAAATCCAAGGGTCAGCTGAAGAAATTTTGCCCGGACAAAGGGAAG
ACAAGGGCAAAGGTATTGCTGAAGCATCGCCGGAACCTGAAGATAGTGAAGCAGAGGAGCCACGGTTGCCGTATAACCGCTTCATCAACAATCTTGCTCGATCAAAGTAT
GTCGAGATGCTGAGAAGAGACTTTTTGTTTGAGTGTGGGTTTGGCGATGAGCTGCCACGGTTCTTGAGGACTGGAATAGCGAACCATGGCTGGAGTCAGTTCTGTGCAAT
GCAGGAGCCGGTCAATTCCAACATTGTCCGTCCATTAGGTCCCCCTGCTAGCTCCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATTAAGAATCATGT
CCGTTGAAGTATTCAGAGTCGTCAACGGAGTGGTATCAGAGCCATGCCCCAGGCGTAGCCGTGTCGGGTGGAATCCTCGGGTGCCGCACAAAGAAGTTGTGAGCCTTGAT
AGTAATGGTGGAGATCCGTTGTTGAGCTTTGGGCAGGCGGGTATACTCCGGAGAAGAGGAGTCATCCTGGATAAGAGCAAACTCTCGAAAAACAGAGGAAAAGCTGGAAT
TCCCCAGAAATGCGACCGCATTTCTGGGAAGGCAAAAGTGAAATGCGACCGCATTTCTGCAAAAACCGAGACCGTTCGAGTCGTCCGTGGCACCTATTTCGCAGCTCCTC
AACCATCTTCTACACTATATAAGCTCGAGATTCGAAGTCAAATCCAAGCAGAACTCACTTGGAAGAAAAGGGTGGTGACAGAACCCTGGCTCGACGCCAATGAGTAG
Protein sequenceShow/hide protein sequence
MGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRILLEGNLHEESDVATCRTGEIQGSAEEILPGQREDKGKGIAEASPEPEDSEAEEPRLPYNRFINNLARSKY
VEMLRRDFLFECGFGDELPRFLRTGIANHGWSQFCAMQEPVNSNIVRPLGPPASSGEDQMVVFFVVAEQLRIMSVEVFRVVNGVVSEPCPRRSRVGWNPRVPHKEVVSLD
SNGGDPLLSFGQAGILRRRGVILDKSKLSKNRGKAGIPQKCDRISGKAKVKCDRISAKTETVRVVRGTYFAAPQPSSTLYKLEIRSQIQAELTWKKRVVTEPWLDANE