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Spg032469 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032469
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold2:28762351..28765224
RNA-Seq ExpressionSpg032469
SyntenySpg032469
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.3e-0574.29Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP
        GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0468.75Show/hide
Query:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQ +VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]4.5e-0778.38Show/hide
Query:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R
Subjt:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0776.32Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]2.1e-0468.75Show/hide
Query:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQ +VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein1.0e-0468.75Show/hide
Query:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQ +VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
A0A5A7SPG1 Pol protein1.6e-0574.29Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP
        GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP
A0A5A7U2P4 Integrase catalytic domain-containing protein2.2e-0778.38Show/hide
Query:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R
Subjt:  ESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
A0A5D3C3J6 Gag/pol protein5.8e-0876.32Show/hide
Query:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  GESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
A0A5D3E3M6 Uncharacterized protein1.0e-0468.75Show/hide
Query:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
        + L  WGQ +VGSWEHNH RWNSL+PD R SR
Subjt:  ISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGA
CTCTAGGGTAAGTAGAGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCTATTGTCTCTCCTTCTCTCAGAGATTTCTCCCAAA
AGACTCCCACAAGTCTCATGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTCTTCAATCTTATTGGCAAGAAA
AGGCGAATTGATCAAGACTTTCTACAAAAATCAAAGGATAACATTAAACGAACAGGAGTTCATAGTAAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCATGAAAT
AATCAGCAGGCCGCGCCAAAGGTTACATGAAGCCGAGCATGGACCTCACGGTGTGAACTCGGGGGAAGGAGTTCATGGTGTTTCAAATCCGATGGTCGGGCCCTCCGAAG
GGATGGTTGCTCCAGGGCAACACGCAGGCGGACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGA
CTCTAGGGTAAGTAGAGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCTATTGTCTCTCCTTCTCTCAGAGATTTCTCCCAAA
AGACTCCCACAAGTCTCATGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTCTTCAATCTTATTGGCAAGAAA
AGGCGAATTGATCAAGACTTTCTACAAAAATCAAAGGATAACATTAAACGAACAGGAGTTCATAGTAAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCATGAAAT
AATCAGCAGGCCGCGCCAAAGGTTACATGAAGCCGAGCATGGACCTCACGGTGTGAACTCGGGGGAAGGAGTTCATGGTGTTTCAAATCCGATGGTCGGGCCCTCCGAAG
GGATGGTTGCTCCAGGGCAACACGCAGGCGGACCATAG
Protein sequenceShow/hide protein sequence
MGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRVSRGKGLGLYLYIGPLGWGERHPIVSPSLRDFSQKTPTSLMLQEVLEIYRCSRLVVFAQEGCCVFNLIGKK
RRIDQDFLQKSKDNIKRTGVHSKLRIKIELPRSSHEIISRPRQRLHEAEHGPHGVNSGEGVHGVSNPMVGPSEGMVAPGQHAGGP