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Spg032474 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032474
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:29573592..29577909
RNA-Seq ExpressionSpg032474
SyntenySpg032474
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025774.1 hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa]9.6e-0866.67Show/hide
Query:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSSMV
        D+EP+A  YRVHT Y+ LLTLSVL DNDAVVEIE PVPD L  SAE+  S + V
Subjt:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSSMV

KAA0032980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-0972Show/hide
Query:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRS
        D+EPEA  YRVHT Y+PLLTLSVLRDNDA+VEIE  VP+ LS S E+S S
Subjt:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRS

KAA0037923.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-0649.25Show/hide
Query:  VVCVRGVSGKIGWESRFHFFR----------------DIEPEAIWYRVHTSYIPLLTLSVLRDNDAV
        VV  RG+S    WE   H FR                ++EPEAIWYRVH  +IPLLTLSVLR+ND V
Subjt:  VVCVRGVSGKIGWESRFHFFR----------------DIEPEAIWYRVHTSYIPLLTLSVLRDNDAV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0652.13Show/hide
Query:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS
        V+K NQKLYL   S           G SGK  W+      R          + T+ I PL TLSVLRDNDAVVEIELPVPDTL TSAESS S+S
Subjt:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.1e-0652.13Show/hide
Query:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS
        V+K NQKLYL   S           G SGK  W+      R          + T+ I PL TLSVLRDNDAVVEIELPVPDTL TSAESS S+S
Subjt:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7SJC7 Uncharacterized protein4.6e-0866.67Show/hide
Query:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSSMV
        D+EP+A  YRVHT Y+ LLTLSVL DNDAVVEIE PVPD L  SAE+  S + V
Subjt:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSSMV

A0A5A7SPZ6 DNA/RNA polymerases superfamily protein1.4e-0972Show/hide
Query:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRS
        D+EPEA  YRVHT Y+PLLTLSVLRDNDA+VEIE  VP+ LS S E+S S
Subjt:  DIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRS

A0A5A7T4K8 Reverse transcriptase8.7e-0749.25Show/hide
Query:  VVCVRGVSGKIGWESRFHFFR----------------DIEPEAIWYRVHTSYIPLLTLSVLRDNDAV
        VV  RG+S    WE   H FR                ++EPEAIWYRVH  +IPLLTLSVLR+ND V
Subjt:  VVCVRGVSGKIGWESRFHFFR----------------DIEPEAIWYRVHTSYIPLLTLSVLRDNDAV

A0A5A7V9N3 Reverse transcriptase5.1e-0752.13Show/hide
Query:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS
        V+K NQKLYL   S           G SGK  W+      R          + T+ I PL TLSVLRDNDAVVEIELPVPDTL TSAESS S+S
Subjt:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS

A0A5D3DSY7 Putative Retrotransposon protein5.1e-0752.13Show/hide
Query:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS
        V+K NQKLYL   S           G SGK  W+      R          + T+ I PL TLSVLRDNDAVVEIELPVPDTL TSAESS S+S
Subjt:  VYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYI-PLLTLSVLRDNDAVVEIELPVPDTLSTSAESSRSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTTGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATAAAGGGAAGCAC
AGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGAAAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGAGATATTGAGCCCGAGGCTATATGGTACCGTG
TGCACACAAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTCTGCTGAAAGT
TCCAGATCAAGCTCCATGGTGGATTTTGCTGCAGCAAACGATTCTACTGGGGGTTCACTGGATCTTCTGGACCCTACGAAAGACGCGGCACATCAGCCATTAAATTTTGG
TTTCTACGCTGCTCTCTCCTTCTTCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTTGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATAAAGGGAAGCAC
AGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGAAAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGAGATATTGAGCCCGAGGCTATATGGTACCGTG
TGCACACAAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTCTGCTGAAAGT
TCCAGATCAAGCTCCATGGTGGATTTTGCTGCAGCAAACGATTCTACTGGGGGTTCACTGGATCTTCTGGACCCTACGAAAGACGCGGCACATCAGCCATTAAATTTTGG
TTTCTACGCTGCTCTCTCCTTCTTCTCCTGA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLLFFEHSGVYKLNQKLYLIKGSTEPRICVVCVRGVSGKIGWESRFHFFRDIEPEAIWYRVHTSYIPLLTLSVLRDNDAVVEIELPVPDTLSTSAES
SRSSSMVDFAAANDSTGGSLDLLDPTKDAAHQPLNFGFYAALSFFS