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Spg032482 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032482
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:29488343..29490409
RNA-Seq ExpressionSpg032482
SyntenySpg032482
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1352.78Show/hide
Query:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST
        VE EA+   VGKLIQ+   F          +  PR NR SLQ REL KT   +          L TLSVLRDNDA VEIELPVP+TLPTS E     SST
Subjt:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST

Query:  WVELYIES
        W+ELY ES
Subjt:  WVELYIES

KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1258.14Show/hide
Query:  EFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES
        +F + K  R +PRENR SLQ  EL KT             PL TLSVLRDNDA VEIEL VP+TLPTSAE S+  S+TW+ELY ES
Subjt:  EFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES

TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]2.1e-1265.33Show/hide
Query:  PRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES
        PRENR SLQ  EL KT             PL TLSVLRDNDA VEIEL VPNTLPTSAE S   SSTW+ELY ES
Subjt:  PRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1352.78Show/hide
Query:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST
        VE EA+   VGKLIQ+   F          +  PR NR SLQ REL KT   +          L TLSVLRDNDA VEIELPVP+TLPTS E     SST
Subjt:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST

Query:  WVELYIES
        W+ELY ES
Subjt:  WVELYIES

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-1256.84Show/hide
Query:  PRENRLSLQARELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIESFCIVNVFVR
        PRENRLSLQ  EL KT       E +  R    V T  I PL TLSVLRDN+A VEIELPVP+TLPTSAE  +  SSTW+ELY+ES  +  +F +
Subjt:  PRENRLSLQARELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIESFCIVNVFVR

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase5.4e-1452.78Show/hide
Query:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST
        VE EA+   VGKLIQ+   F          +  PR NR SLQ REL KT   +          L TLSVLRDNDA VEIELPVP+TLPTS E     SST
Subjt:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST

Query:  WVELYIES
        W+ELY ES
Subjt:  WVELYIES

A0A5D3BRI2 Uncharacterized protein1.0e-1265.33Show/hide
Query:  PRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES
        PRENR SLQ  EL KT             PL TLSVLRDNDA VEIEL VPNTLPTSAE S   SSTW+ELY ES
Subjt:  PRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES

A0A5D3BV68 Reverse transcriptase5.4e-1452.78Show/hide
Query:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST
        VE EA+   VGKLIQ+   F          +  PR NR SLQ REL KT   +          L TLSVLRDNDA VEIELPVP+TLPTS E     SST
Subjt:  VELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSST

Query:  WVELYIES
        W+ELY ES
Subjt:  WVELYIES

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.3e-1256.84Show/hide
Query:  PRENRLSLQARELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIESFCIVNVFVR
        PRENRLSLQ  EL KT       E +  R    V T  I PL TLSVLRDN+A VEIELPVP+TLPTSAE  +  SSTW+ELY+ES  +  +F +
Subjt:  PRENRLSLQARELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIESFCIVNVFVR

A0A5D3D5E2 Gag/pol protein1.3e-1258.14Show/hide
Query:  EFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES
        +F + K  R +PRENR SLQ  EL KT             PL TLSVLRDNDA VEIEL VP+TLPTSAE S+  S+TW+ELY ES
Subjt:  EFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIELPVPNTLPTSAEGSKLTSSTWVELYIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGGATTATCACTGCATATCTGTAAACTTGAGACTTCGCTTTGACTATTTGCTCTTGTCAGAAATTATGGGAAGTTGGATTAAAGTTGTTGTTGAATTAGAAGCTCAATT
TCGTATGGTTGGAAAGCTTATTCAATTTTCCTATAACTTTCATGAAGAATTCATGAGCAAAAAATTGACTAGAAGTAGGCCAAGAGAAAATAGGTTGAGTTTACAGGCCA
GGGAACTAGCCAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTTTCGTAGAGATCGAG
CTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAGGCTCCAAGTTGACTTCCAGTACGTGGGTGGAGTTGTACATCGAGTCTTTTTGTATTGTAAATGTCTTTGTAAG
GATTGGATAG
mRNA sequenceShow/hide mRNA sequence
AAGGATTATCACTGCATATCTGTAAACTTGAGACTTCGCTTTGACTATTTGCTCTTGTCAGAAATTATGGGAAGTTGGATTAAAGTTGTTGTTGAATTAGAAGCTCAATT
TCGTATGGTTGGAAAGCTTATTCAATTTTCCTATAACTTTCATGAAGAATTCATGAGCAAAAAATTGACTAGAAGTAGGCCAAGAGAAAATAGGTTGAGTTTACAGGCCA
GGGAACTAGCCAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTTTCGTAGAGATCGAG
CTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAGGCTCCAAGTTGACTTCCAGTACGTGGGTGGAGTTGTACATCGAGTCTTTTTGTATTGTAAATGTCTTTGTAAG
GATTGGATAG
Protein sequenceShow/hide protein sequence
KDYHCISVNLRLRFDYLLLSEIMGSWIKVVVELEAQFRMVGKLIQFSYNFHEEFMSKKLTRSRPRENRLSLQARELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAFVEIE
LPVPNTLPTSAEGSKLTSSTWVELYIESFCIVNVFVRIG