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Spg032508 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032508
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold2:28802981..28807896
RNA-Seq ExpressionSpg032508
SyntenySpg032508
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147181.1 uncharacterized protein LOC111016192 [Momordica charantia]1.5e-1453.85Show/hide
Query:  GIIHSESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        GIIH E  + +++A + E++++ GP VY CP+ FEL+NW+V+ELPSFVN  SN   IE  ND KYELD+  Y++ESDE
Subjt:  GIIHSESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]7.3e-1452.56Show/hide
Query:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        G IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V++LPSFVN  SN   IE  ND KYELD+  Y +ESDE
Subjt:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]1.1e-0438.37Show/hide
Query:  LSRTLQ--GIIHSESQDPAI-MAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        LS +L+  G IH E  + ++  A+ E++++  P VY CP+ F+L+NW+V               IE  ND KYELD+  Y++ESDE
Subjt:  LSRTLQ--GIIHSESQDPAI-MAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]1.9e-0653.06Show/hide
Query:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVN
        G IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN
Subjt:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVN

XP_022158764.1 uncharacterized protein LOC111025231 [Momordica charantia]2.4e-0955.74Show/hide
Query:  EQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        E++++ GP VY  P+ FEL+NW+V+EL SFVN  SN   IE  ND KYELD+  Y++ESDE
Subjt:  EQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H8.7e-0538.46Show/hide
Query:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        G IH E    +++ A+ E++++  P VY CP+ FEL+NW+V               IE  ND KYELD+  Y++ESD+
Subjt:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

A0A6J1D099 Ribonuclease H3.5e-1452.56Show/hide
Query:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        G IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V++LPSFVN  SN   IE  ND KYELD+  Y +ESDE
Subjt:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

A0A6J1D1K4 uncharacterized protein LOC1110161927.1e-1553.85Show/hide
Query:  GIIHSESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        GIIH E  + +++A + E++++ GP VY CP+ FEL+NW+V+ELPSFVN  SN   IE  ND KYELD+  Y++ESDE
Subjt:  GIIHSESQDPAIMA-IIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

A0A6J1DR66 uncharacterized protein LOC1110227919.3e-0753.06Show/hide
Query:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVN
        G IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN
Subjt:  GIIHSESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVN

A0A6J1E0D0 uncharacterized protein LOC1110252311.2e-0955.74Show/hide
Query:  EQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE
        E++++ GP VY  P+ FEL+NW+V+EL SFVN  SN   IE  ND KYELD+  Y++ESDE
Subjt:  EQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSRTYDVESDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCTACCCTCTTTATGGCACGAGAGGGATTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATCAAGAGTGTCCTCC
AACATCAGCGAAATCAAGGCTGGTTCGTTGCTGTTTTTCTGCGAATTCGCGAGGGAAAAGGCGGTTTTTATCAAGAACACTTCAAGGAATAATTCATTCGGAATCTCAAG
ACCCTGCAATCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTGCCATCA
TTTGTTAATGAGATATCAAACGAAATTGGGATTGAAAGCGTTAATGATCTTAAATACGAACTTGATTCTCGTACCTACGATGTTGAGTCCGATGAGAGAACAAGTGCGTC
GAGACGCTATGCAAGGCAGCGTCGCGACGCTACCCATTTCTTGGGCAACAAGACGCGTGCGTTGCAGCGTCGCGACGCTGTGAAATGTAGCGTCGCGACGCTACCCCCAT
TCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATGGACCATCAATCAATTCATTCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTT
CTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTTGGGGAATTTTGGGAGCATCCTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCACCAAGCAAAGGGG
TTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCCTACCCTCTTTATGGCACGAGAGGGATTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATCAAGAGTGTCCTCC
AACATCAGCGAAATCAAGGCTGGTTCGTTGCTGTTTTTCTGCGAATTCGCGAGGGAAAAGGCGGTTTTTATCAAGAACACTTCAAGGAATAATTCATTCGGAATCTCAAG
ACCCTGCAATCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTGCCATCA
TTTGTTAATGAGATATCAAACGAAATTGGGATTGAAAGCGTTAATGATCTTAAATACGAACTTGATTCTCGTACCTACGATGTTGAGTCCGATGAGAGAACAAGTGCGTC
GAGACGCTATGCAAGGCAGCGTCGCGACGCTACCCATTTCTTGGGCAACAAGACGCGTGCGTTGCAGCGTCGCGACGCTGTGAAATGTAGCGTCGCGACGCTACCCCCAT
TCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATGGACCATCAATCAATTCATTCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTT
CTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTTGGGGAATTTTGGGAGCATCCTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCACCAAGCAAAGGGG
TTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAG
Protein sequenceShow/hide protein sequence
MGPTLFMAREGFLFVGWTSNRLFIRGALVLKDQECPPTSAKSRLVRCCFSANSRGKRRFLSRTLQGIIHSESQDPAIMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPS
FVNEISNEIGIESVNDLKYELDSRTYDVESDERTSASRRYARQRRDATHFLGNKTRALQRRDAVKCSVATLPPFRAYKKAPLGASWTINQFILQSILSFLWLLWSLSQGF
LAFLREFFSGKYFGEFWEHPRKLKGVFGGALSTKQRGFSTVNSFPFMLLNYAFYCKCCGYFSYV