; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032509 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032509
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:29074864..29077185
RNA-Seq ExpressionSpg032509
SyntenySpg032509
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]2.2e-0981.58Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        Y+ LLTL+VLRDNDA+VSAGR PLRQR+WECWA PTTS
Subjt:  YIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1650.88Show/hide
Query:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL
        V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                              K+ I PL TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL

Query:  RQRRWECWAGPTTS
        RQRRWEC  GPTTS
Subjt:  RQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]3.8e-0682.86Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        L TLSVLR+NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1650.88Show/hide
Query:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL
        V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                              K+ I PL TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL

Query:  RQRRWECWAGPTTS
        RQRRWEC  GPTTS
Subjt:  RQRRWECWAGPTTS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.0e-1142.75Show/hide
Query:  VYKLNQKLYLEKDKGQK------RTSNLCCLCSGHFWTNWLGIPF--SFLEAKSY--------IPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        V K NQKLY + + G+          N   L +G      + I +    L  + Y         PL TLSVLRDNDAVVS G+                 
Subjt:  VYKLNQKLYLEKDKGQK------RTSNLCCLCSGHFWTNWLGIPF--SFLEAKSY--------IPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

Query:  KTMGVLGGPHYIVGLVNVGCTGRALHNIDRS
        K  GV GGPHYIVGLVNVGCTGR LH+IDRS
Subjt:  KTMGVLGGPHYIVGLVNVGCTGRALHNIDRS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.0e-0981.58Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        Y+ LLTL+VLRDNDA+VSAGR PLRQR+WECWA PTTS
Subjt:  YIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase6.8e-1750.88Show/hide
Query:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL
        V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                              K+ I PL TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL

Query:  RQRRWECWAGPTTS
        RQRRWEC  GPTTS
Subjt:  RQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein1.8e-0682.86Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        L TLSVLR+NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase6.8e-1750.88Show/hide
Query:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL
        V+K NQKLYL +   + R   L CLCSG FW NWL I FSFL+                              K+ I PL TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEA-----------------------------KSYI-PLLTLSVLRDNDAVVSAGRAPL

Query:  RQRRWECWAGPTTS
        RQRRWEC  GPTTS
Subjt:  RQRRWECWAGPTTS

A0A5D3CAC6 Uncharacterized protein5.0e-1242.75Show/hide
Query:  VYKLNQKLYLEKDKGQK------RTSNLCCLCSGHFWTNWLGIPF--SFLEAKSY--------IPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        V K NQKLY + + G+          N   L +G      + I +    L  + Y         PL TLSVLRDNDAVVS G+                 
Subjt:  VYKLNQKLYLEKDKGQK------RTSNLCCLCSGHFWTNWLGIPF--SFLEAKSY--------IPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

Query:  KTMGVLGGPHYIVGLVNVGCTGRALHNIDRS
        K  GV GGPHYIVGLVNVGCTGR LH+IDRS
Subjt:  KTMGVLGGPHYIVGLVNVGCTGRALHNIDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GAATCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCAT
TTCTTGAGGCGAAGAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGC
TGGGCGGGCCCCACTACATCAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATAGATCG
GTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GAATCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCAGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCAT
TTCTTGAGGCGAAGAGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGC
TGGGCGGGCCCCACTACATCAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATAGATCG
GTCATAG
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFVQTRRISGVLWCFEHSGVYKLNQKLYLEKDKGQKRTSNLCCLCSGHFWTNWLGIPFSFLEAKSYIPLLTLSVLRDNDAVVSAGRAPLRQRRWEC
WAGPTTSKTMGVLGGPHYIVGLVNVGCTGRALHNIDRS