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Spg032517 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032517
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L7a
Genome locationscaffold2:28695114..28695833
RNA-Seq ExpressionSpg032517
SyntenySpg032517
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0005840 - ribosome (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1217495.1 60S ribosomal protein L7a [Morella rubra]8.3e-0862.5Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KMEI  CI K K+RL   +F
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF

KAG5601832.1 hypothetical protein H5410_033202 [Solanum commersonii]1.1e-0762.5Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF
        L H   +  +NKA LVVI HDVD IELVVWLPALC KMEI  CI K KARL  + +
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF

KJB38308.1 hypothetical protein B456_006G272400 [Gossypium raimondii]8.3e-0859.02Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSFS
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KME+  CI K K+RL  + F  S S
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSFS

PHT54050.1 Cytochrome b-c1 complex subunit Rieske-5, mitochondrial [Capsicum baccatum]6.3e-0864.29Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF
        L H   +  +NKA LVVI HDVD IELVVWLPALC KMEI  CI K KARL   +F
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF

TKY67709.1 60S ribosomal protein L7a [Spatholobus suberectus]2.8e-0860.94Show/hide
Query:  IGYPHPHVSYMDALDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        + Y   HV+Y+        IE +NKA LVVI HDVD IELVVWLPALC KMEI  CI K KARL
Subjt:  IGYPHPHVSYMDALDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

TrEMBL top hitse value%identityAlignment
A0A0D2QG59 60S ribosomal protein L7a4.0e-0859.02Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSFS
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KME+  CI K K+RL  + F  S S
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSFS

A0A0E0ETM5 60S ribosomal protein L7a5.2e-0858.33Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSF
        L+H   +  ++KA LVVI HDVD IELVVWLPALC KME+  CI K KARL   +F   F
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSF

A0A2G2X998 Quinol--cytochrome-c reductase3.1e-0864.29Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF
        L H   +  +NKA LVVI HDVD IELVVWLPALC KMEI  CI K KARL   +F
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF

A0A4D8ZZT5 60S ribosomal protein L7a5.2e-0868.63Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  +NKA LVVIVHDVD IELVVWLPALC KMEI  CI + KARL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

A0A6A1VXJ7 60S ribosomal protein L7a4.0e-0862.5Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KMEI  CI K K+RL   +F
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDF

SwissProt top hitse value%identityAlignment
O76732 60S ribosomal protein L7a4.3e-0766.67Show/hide
Query:  KNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        + KA LV+I HDVD IELVV+LPALC KM +  CI K KARL
Subjt:  KNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

P0DKK7 60S ribosomal protein L7a-29.2e-1064.71Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  ++KA LVVI HDVD IELVVWLPALC KME+  CI K KARL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

P35685 60S ribosomal protein L7a-19.2e-1064.71Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  ++KA LVVI HDVD IELVVWLPALC KME+  CI K KARL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

P49692 60S ribosomal protein L7a-15.4e-1064.71Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KME+  CI K K+RL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

Q9LZH9 60S ribosomal protein L7a-25.4e-1064.71Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KME+  CI K K+RL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

Arabidopsis top hitse value%identityAlignment
AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein3.8e-1164.71Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KME+  CI K K+RL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL

AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein3.8e-1164.71Show/hide
Query:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL
        L+H   +  +NKA LVVI HDVD IELVVWLPALC KME+  CI K K+RL
Subjt:  LDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCATTGCATAGGATACCCCCACCCACATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGAACAAGGCATATCTTGTTGTGATTGT
ACATGATGTGGATCTGATTGAGTTGGTTGTTTGGCTCCCAGCTCTATGTATGAAGATGGAAATTCAAAATTGCATTGGGAAGAGAAAAGCACGTTTGGAAGGGTTAGATT
TTCCTTTTTCCTTTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCATTGCATAGGATACCCCCACCCACATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGAACAAGGCATATCTTGTTGTGATTGT
ACATGATGTGGATCTGATTGAGTTGGTTGTTTGGCTCCCAGCTCTATGTATGAAGATGGAAATTCAAAATTGCATTGGGAAGAGAAAAGCACGTTTGGAAGGGTTAGATT
TTCCTTTTTCCTTTTCCTAA
Protein sequenceShow/hide protein sequence
MQTHCIGYPHPHVSYMDALDHCICIEYKNKAYLVVIVHDVDLIELVVWLPALCMKMEIQNCIGKRKARLEGLDFPFSFS