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Spg032525 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032525
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold2:31455420..31462346
RNA-Seq ExpressionSpg032525
SyntenySpg032525
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]9.1e-2449.36Show/hide
Query:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY
        STGFSSK GG LVFS  LSI        ++   I   WPR NR  LQTGELDK                  VEIELP+PDTLP SAESS ++SSTW+ELY
Subjt:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG  T
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]6.9e-2453.44Show/hide
Query:  QSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIWPRENRSSLQTGELDKTVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQ--------
        +ST F SK GG LVFS  LSIL           PR NR +L TG+LDKTVEIELPVPDTLP SAESS+++SSTW+ELY ESVH+  + +           
Subjt:  QSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIWPRENRSSLQTGELDKTVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQ--------

Query:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
          EG    +  DD+ WLHA+F AK AG PGG
Subjt:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.9e-2737.63Show/hide
Query:  LTFQPIFSSFLHHFPFKSSELLRERVKEEEEEEFRGLEVEEDKKSSCKASHSRIWVQNFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW----
        + FQP F SFLHHFP K SE   ERVK EEEEEFRGL +++  KSSCKA+H RIW         STGFSSK  G LVFS  LSIL      +   W    
Subjt:  LTFQPIFSSFLHHFPFKSSELLRERVKEEEEEEFRGLEVEEDKKSSCKASHSRIWVQNFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW----

Query:  ---------PRENRSSLQTGELDK----------------------------------------------------------------------------
                 PR NRSSLQTG+LDK                                                                            
Subjt:  ---------PRENRSSLQTGELDK----------------------------------------------------------------------------

Query:  ---TVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHAIFRAKLAGGPGGEST
           ++EIEL VPDTLP SAESS ++SSTW+E   E  +  +   +V+   R+  E        E+DV WLHA+FRAK+AGG GG  T
Subjt:  ---TVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHAIFRAKLAGGPGGEST

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.5e-2645Show/hide
Query:  NFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW--PRENRSSLQTGELDKTV---------------EIELPVPDTLPMSAESSRTSSSTWVEL
        ++  G +STGFSSK GG LV S  LSIL    ++   ++  PR NR SLQTGELDKTV                IELPVPDTLP SAESS ++SSTW+EL
Subjt:  NFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW--PRENRSSLQTGELDKTV---------------EIELPVPDTLPMSAESSRTSSSTWVEL

Query:  YIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGESTGAEGSGTRSGYK------VRLAIEISVRKPLKVRIHDPRR
        Y ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG  T  E S  R   +       R A EI   +P +V   DP++
Subjt:  YIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGESTGAEGSGTRSGYK------VRLAIEISVRKPLKVRIHDPRR

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.1e-2449.36Show/hide
Query:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY
        STGFSSK GG LVFS  LSI        ++   I   WPR NR  LQTGELDK                  VEIELP+PDTLP SAESS ++SSTW+ELY
Subjt:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG  T
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.4e-2449.36Show/hide
Query:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY
        STGFSSK GG LVFS  LSI        ++   I   WPR NR  LQTGELDK                  VEIELP+PDTLP SAESS ++SSTW+ELY
Subjt:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG  T
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST

A0A5A7UAH6 CCHC-type domain-containing protein3.4e-2453.44Show/hide
Query:  QSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIWPRENRSSLQTGELDKTVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQ--------
        +ST F SK GG LVFS  LSIL           PR NR +L TG+LDKTVEIELPVPDTLP SAESS+++SSTW+ELY ESVH+  + +           
Subjt:  QSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIWPRENRSSLQTGELDKTVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQ--------

Query:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
          EG    +  DD+ WLHA+F AK AG PGG
Subjt:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5D3CAC6 Uncharacterized protein1.9e-2737.63Show/hide
Query:  LTFQPIFSSFLHHFPFKSSELLRERVKEEEEEEFRGLEVEEDKKSSCKASHSRIWVQNFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW----
        + FQP F SFLHHFP K SE   ERVK EEEEEFRGL +++  KSSCKA+H RIW         STGFSSK  G LVFS  LSIL      +   W    
Subjt:  LTFQPIFSSFLHHFPFKSSELLRERVKEEEEEEFRGLEVEEDKKSSCKASHSRIWVQNFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW----

Query:  ---------PRENRSSLQTGELDK----------------------------------------------------------------------------
                 PR NRSSLQTG+LDK                                                                            
Subjt:  ---------PRENRSSLQTGELDK----------------------------------------------------------------------------

Query:  ---TVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHAIFRAKLAGGPGGEST
           ++EIEL VPDTLP SAESS ++SSTW+E   E  +  +   +V+   R+  E        E+DV WLHA+FRAK+AGG GG  T
Subjt:  ---TVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHAIFRAKLAGGPGGEST

A0A5D3CJX3 CCHC-type domain-containing protein1.2e-2645Show/hide
Query:  NFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW--PRENRSSLQTGELDKTV---------------EIELPVPDTLPMSAESSRTSSSTWVEL
        ++  G +STGFSSK GG LV S  LSIL    ++   ++  PR NR SLQTGELDKTV                IELPVPDTLP SAESS ++SSTW+EL
Subjt:  NFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIW--PRENRSSLQTGELDKTV---------------EIELPVPDTLPMSAESSRTSSSTWVEL

Query:  YIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGESTGAEGSGTRSGYK------VRLAIEISVRKPLKVRIHDPRR
        Y ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG  T  E S  R   +       R A EI   +P +V   DP++
Subjt:  YIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGESTGAEGSGTRSGYK------VRLAIEISVRKPLKVRIHDPRR

A0A5D3DR18 Gag/pol protein4.4e-2449.36Show/hide
Query:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY
        STGFSSK GG LVFS  LSI        ++   I   WPR NR  LQTGELDK                  VEIELP+PDTLP SAESS ++SSTW+ELY
Subjt:  STGFSSKLGGSLVFSGVLSIL---GCTSRIRSSI---WPRENRSSLQTGELDK-----------------TVEIELPVPDTLPMSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST
         ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG  T
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGEST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGACAGCAAGACACCCACCACCGACAAGCTCACTTTTCAGCCCATTTTCAGTTCATTCCTCCATCATTTTCCATTCAAATCTTCAGAGCTCTTGAGGGAGAG
AGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTCTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTTTTTGAATG
GAAAACAGAGCACAGGATTTTCGAGTAAACTAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGCCAAGA
GAAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGAACAAGCTCCAG
TACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACG
CCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGTCGACAGGGGCTGAGGGATCTGGAACTCGAAGTGGTTACAAGGTAAGATTGGCTATTGAGATCAGCGTG
AGAAAGCCTTTGAAGGTAAGAATCCACGATCCTCGAAGATTTGATGTCGGATTGGGGGATTTTCAGATGATTCTGTGCAAAACTCGCGAATCTCGGAATTCTATCGAAAA
GCCCAGTTTCGGCCGCATCTCGAGCGCACTTTCCTCTGCATTCTGCTTTGACAATTATGTCTTCAGCGAGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCTGGAGCTA
TCACTGTAGGGATAAAAGCCCTAGGCAACGAAGATTTCAGAGACCTTACTCAAACTAAACAACGATCGGAATACGGATACGTTGGAAAAATATTTACAGTAATCAAATCA
CATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATGACAGCAAGACACCCACCACCGACAAGCTCACTTTTCAGCCCATTTTCAGTTCATTCCTCCATCATTTTCCATTCAAATCTTCAGAGCTCTTGAGGGAGAG
AGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTCTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTTTTTGAATG
GAAAACAGAGCACAGGATTTTCGAGTAAACTAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGCCAAGA
GAAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGAACAAGCTCCAG
TACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACG
CCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGTCGACAGGGGCTGAGGGATCTGGAACTCGAAGTGGTTACAAGGTAAGATTGGCTATTGAGATCAGCGTG
AGAAAGCCTTTGAAGGTAAGAATCCACGATCCTCGAAGATTTGATGTCGGATTGGGGGATTTTCAGATGATTCTGTGCAAAACTCGCGAATCTCGGAATTCTATCGAAAA
GCCCAGTTTCGGCCGCATCTCGAGCGCACTTTCCTCTGCATTCTGCTTTGACAATTATGTCTTCAGCGAGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCTGGAGCTA
TCACTGTAGGGATAAAAGCCCTAGGCAACGAAGATTTCAGAGACCTTACTCAAACTAAACAACGATCGGAATACGGATACGTTGGAAAAATATTTACAGTAATCAAATCA
CATTAA
Protein sequenceShow/hide protein sequence
MGNDSKTPTTDKLTFQPIFSSFLHHFPFKSSELLRERVKEEEEEEFRGLEVEEDKKSSCKASHSRIWVQNFLNGKQSTGFSSKLGGSLVFSGVLSILGCTSRIRSSIWPR
ENRSSLQTGELDKTVEIELPVPDTLPMSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGESTGAEGSGTRSGYKVRLAIEISV
RKPLKVRIHDPRRFDVGLGDFQMILCKTRESRNSIEKPSFGRISSALSSAFCFDNYVFSEGLLSLYGFAGAGAITVGIKALGNEDFRDLTQTKQRSEYGYVGKIFTVIKS
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