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Spg032526 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032526
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:28999406..29010383
RNA-Seq ExpressionSpg032526
SyntenySpg032526
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.2e-2461.82Show/hide
Query:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA
        S  WPRG+R SLQTG+LDKT                 VEIEL +PDTLPTSAESS S+SST LELY ESV  +       GS GIIRGDDVCWLHAVFRA
Subjt:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA

Query:  KLAGGPGGGL
        K  GGPGGG+
Subjt:  KLAGGPGGGL

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.1e-2854.49Show/hide
Query:  SVARSEINLSTSGFLFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRS-SIWPRGSRSSLQTGKLDKTVEIELSVPDTLPTSAESSRSSSSTWLEL
        ++A S  N      LFGLSY E ++   E TR +S      +  G   F  + SI PRG+R +L TGKLDKTVEIEL VPDTLPTSAESS+S+SSTWLEL
Subjt:  SVARSEINLSTSGFLFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRS-SIWPRGSRSSLQTGKLDKTVEIELSVPDTLPTSAESSRSSSSTWLEL

Query:  YIESVTFQTRF----NVSV-------GSTGIIRGDDVCWLHAVFRAKLAGGPGGGL
        Y ESV  +  F    +V V       GS GI+RGDD+CWLHAVF AK AG PGGG+
Subjt:  YIESVTFQTRF----NVSV-------GSTGIIRGDDVCWLHAVFRAKLAGGPGGGL

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.1e-2360.17Show/hide
Query:  PRGSRSSLQTGKLDKT---------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVC
        PRG+R SLQT +LDKT               V IEL VPD LPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGI+RGDDVC
Subjt:  PRGSRSSLQTGKLDKT---------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVC

Query:  WLHAVFRAKLAGGPGGGL
        WLHAVFRAK  GGPGGG+
Subjt:  WLHAVFRAKLAGGPGGGL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.3e-2650.92Show/hide
Query:  LFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRSS----IWPRGSRSSLQTGKLDKTV---------------EIELSVPDTLPTSAESSRSSSST
        LF LSY EG K     ++   G L   +   + +  + +    + PRG+R SLQTG+LDKTV                IEL VPDTLPTSAESS S+SST
Subjt:  LFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRSS----IWPRGSRSSLQTGKLDKTV---------------EIELSVPDTLPTSAESSRSSSST

Query:  WLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGL
        WLELY ESV      +F  +        FNVSVGSTGI+RGDDVCWLHAVFRAK  GGPGGG+
Subjt:  WLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGL

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.2e-2461.82Show/hide
Query:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA
        S  WPRG+R SLQTG+LDKT                 VEIEL +PDTLPTSAESS S+SST LELY ESV  +       GS GIIRGDDVCWLHAVFRA
Subjt:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA

Query:  KLAGGPGGGL
        K  GGPGGG+
Subjt:  KLAGGPGGGL

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase3.0e-2461.82Show/hide
Query:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA
        S  WPRG+R SLQTG+LDKT                 VEIEL +PDTLPTSAESS S+SST LELY ESV  +       GS GIIRGDDVCWLHAVFRA
Subjt:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA

Query:  KLAGGPGGGL
        K  GGPGGG+
Subjt:  KLAGGPGGGL

A0A5A7UAH6 CCHC-type domain-containing protein5.3e-2954.49Show/hide
Query:  SVARSEINLSTSGFLFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRS-SIWPRGSRSSLQTGKLDKTVEIELSVPDTLPTSAESSRSSSSTWLEL
        ++A S  N      LFGLSY E ++   E TR +S      +  G   F  + SI PRG+R +L TGKLDKTVEIEL VPDTLPTSAESS+S+SSTWLEL
Subjt:  SVARSEINLSTSGFLFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRS-SIWPRGSRSSLQTGKLDKTVEIELSVPDTLPTSAESSRSSSSTWLEL

Query:  YIESVTFQTRF----NVSV-------GSTGIIRGDDVCWLHAVFRAKLAGGPGGGL
        Y ESV  +  F    +V V       GS GI+RGDD+CWLHAVF AK AG PGGG+
Subjt:  YIESVTFQTRF----NVSV-------GSTGIIRGDDVCWLHAVFRAKLAGGPGGGL

A0A5A7UT17 CCHC-type domain-containing protein5.1e-2460.17Show/hide
Query:  PRGSRSSLQTGKLDKT---------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVC
        PRG+R SLQT +LDKT               V IEL VPD LPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGI+RGDDVC
Subjt:  PRGSRSSLQTGKLDKT---------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVC

Query:  WLHAVFRAKLAGGPGGGL
        WLHAVFRAK  GGPGGG+
Subjt:  WLHAVFRAKLAGGPGGGL

A0A5D3CJX3 CCHC-type domain-containing protein6.4e-2750.92Show/hide
Query:  LFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRSS----IWPRGSRSSLQTGKLDKTV---------------EIELSVPDTLPTSAESSRSSSST
        LF LSY EG K     ++   G L   +   + +  + +    + PRG+R SLQTG+LDKTV                IEL VPDTLPTSAESS S+SST
Subjt:  LFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRSS----IWPRGSRSSLQTGKLDKTV---------------EIELSVPDTLPTSAESSRSSSST

Query:  WLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGL
        WLELY ESV      +F  +        FNVSVGSTGI+RGDDVCWLHAVFRAK  GGPGGG+
Subjt:  WLELYIESV------TFQTR--------FNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGL

A0A5D3D150 Reverse transcriptase3.0e-2461.82Show/hide
Query:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA
        S  WPRG+R SLQTG+LDKT                 VEIEL +PDTLPTSAESS S+SST LELY ESV  +       GS GIIRGDDVCWLHAVFRA
Subjt:  SSIWPRGSRSSLQTGKLDKT-----------------VEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRA

Query:  KLAGGPGGGL
        K  GGPGGG+
Subjt:  KLAGGPGGGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCAATCTGG
GGTGTACAAGTCGAATCAGAAGCTCTATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACACATTGGTTTGGA
ATCTCATTTTCATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTAGTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCTAGATCAAGCTCCAGTCGTCAAGACTTCAAGCGTCGATTTGGTGGCCAGTTATCAAGGCAGATGAGTTCGGGTAGTGCCTATCAGAGGCAGAGTCA
GAGAGCCCCCAGTCAGTCTGCGAGTTCAGTAGCAAGACCGCGGACGGGTCAGGAGTCCGTTGCTAGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGA
GCTACACAGAAGGAATCAAGAGGATTTTCGAGCAAACCAGAAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTTATCAGAAGCTCTATTTGG
CCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTTGGCTTC
ACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGCCTGAAAAATGGACAGCGTCGCGACGCTATTGGCACAGCGTCACGATGCTGTGACGTCATCGACTTG
CCGACCAAGAAATGGGACAGCGTCGCGACGCTGTCCCTACAGCGTCTCGACGCTAGGCGAATTCCAGAACTTTCTGGTGCGATTTTGGGCTTGAATTTGAGCCTCCCTTC
ATTTCTTTTGGGCCACTTTCTCATAGTTGACTTCTTTGGACTCCCCCTTGACCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCAATCTGG
GGTGTACAAGTCGAATCAGAAGCTCTATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACACATTGGTTTGGA
ATCTCATTTTCATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTAGTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCTAGATCAAGCTCCAGTCGTCAAGACTTCAAGCGTCGATTTGGTGGCCAGTTATCAAGGCAGATGAGTTCGGGTAGTGCCTATCAGAGGCAGAGTCA
GAGAGCCCCCAGTCAGTCTGCGAGTTCAGTAGCAAGACCGCGGACGGGTCAGGAGTCCGTTGCTAGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGA
GCTACACAGAAGGAATCAAGAGGATTTTCGAGCAAACCAGAAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTTATCAGAAGCTCTATTTGG
CCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTTGGCTTC
ACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGCCTGAAAAATGGACAGCGTCGCGACGCTATTGGCACAGCGTCACGATGCTGTGACGTCATCGACTTG
CCGACCAAGAAATGGGACAGCGTCGCGACGCTGTCCCTACAGCGTCTCGACGCTAGGCGAATTCCAGAACTTTCTGGTGCGATTTTGGGCTTGAATTTGAGCCTCCCTTC
ATTTCTTTTGGGCCACTTTCTCATAGTTGACTTCTTTGGACTCCCCCTTGACCCATGA
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLHRIFEQTRRISGVLWCFEQSGVYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDTLVWNLIFISSGYIPLSTLSVVRDNDAVVEIELSVPDTLPT
SAESSRSSSSRQDFKRRFGGQLSRQMSSGSAYQRQSQRAPSQSASSVARPRTGQESVARSEINLSTSGFLFGLSYTEGIKRIFEQTRRISGVLWCFEHSGVYKFIRSSIW
PRGSRSSLQTGKLDKTVEIELSVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGLKNGQRRDAIGTASRCCDVIDL
PTKKWDSVATLSLQRLDARRIPELSGAILGLNLSLPSFLLGHFLIVDFFGLPLDP