CuGenDBv2

Gene ID	Spg032537
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	la-related protein 6B
Genome location	scaffold3:23231967..23232914
RNA-Seq Expression	Spg032537
Synteny	Spg032537
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0005634 - nucleus (cellular component) GO:1990904 - ribonucleoprotein complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588510.1 La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-70

82.27

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Query:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGS
        MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGS
Subjt:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGS

Query:  PFHVPIQT--------PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKL
        PFHVPIQ+        PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGAPSRTKLTEEVSQKL
Subjt:  PFHVPIQT--------PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKL

Query:  LNQ
        LNQ
Subjt:  LNQ

XP_022157471.1 la-related protein 6B [Momordica charantia]

3.1e-75

90.61

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Query:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP
        SSSS P SS  SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQP QSAPGPPPPP KQSPRILIPSPPPPP ++HVYPP PPGSPFHVPIQ+PVPVP
Subjt:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP

Query:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        T VVSIQN HHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPD VVQQPQKPQ ESDY APSR+KLTEEVSQKLLNQ
Subjt:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

XP_022928061.1 la-related protein 6B-like [Cucurbita moschata]

2.1e-71

84.77

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Query:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP     P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGAPSRTKLTEEVSQKLLNQ
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

XP_022969525.1 la-related protein 6B-like [Cucurbita maxima]

1.6e-71

84.26

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Query:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPPQS+ G  PPPPP KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGAPSRTKLT EVSQKLLNQ
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

XP_038888029.1 la-related protein 6B [Benincasa hispida]

9.9e-74

90.27

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Query:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG-PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPV
        MAQHS      SSSQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DLQPPQSAPG PPPPPPKQSPRILIPSPPPPPA+MHVY PPPPGSPFHVPIQTPV
Subjt:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG-PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPV

Query:  PVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDT-VVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        PVPTHVVSIQN HHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFH+PDT VVQQPQKP  ESDY APSR+KLTEEVSQKLLNQ
Subjt:  PVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDT-VVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DY71 la-related protein 6B

1.5e-75

90.61

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Query:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP
        SSSS P SS  SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQP QSAPGPPPPP KQSPRILIPSPPPPP ++HVYPP PPGSPFHVPIQ+PVPVP
Subjt:  SSSSPPDSS--SQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVP

Query:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        T VVSIQN HHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPD VVQQPQKPQ ESDY APSR+KLTEEVSQKLLNQ
Subjt:  THVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

A0A6J1EJ80 la-related protein 6B-like

1.0e-71

84.77

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Query:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP     P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPP S+ G  PPPPPP  KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-----PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPP--KQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGAPSRTKLTEEVSQKLLNQ
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

A0A6J1GLH8 la-related protein 6B-like

9.4e-70

86.49

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Query:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDL-QPPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP
        MAQHSSSS   S SQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DL QPP SA GP PPPPKQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQ+P
Subjt:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDL-QPPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP

Query:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        VPVPTHVVS+QN HHYH HHRHHHHSHHVPVLYHPHNPQYYADNGGFH+PDTVVQQ QKPQ E+DY APSR+KL E+VS KLLNQ
Subjt:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

A0A6J1I059 la-related protein 6B-like

7.6e-72

84.26

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Query:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF
        MA HSSSSP       P   SQSDPSLSRNSSLSRLNAQAPEFVPTR SPRPDLQPPQS+ G  PPPPP KQSPRILIPSPPPPPA+MHVYPPPPPGSPF
Subjt:  MAQHSSSSP-------PDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPG--PPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPF

Query:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        HVPIQ+    PVPVPTHVVSI N HHYHPHHR HHHHSHHVPVLYHPHNPQYYADNGGFH+PD VVQQPQKP  ESDYGAPSRTKLT EVSQKLLNQ
Subjt:  HVPIQT----PVPVPTHVVSIQNHHHYHPHHR-HHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

A0A6J1I3E0 la-related protein 6B-like

2.5e-70

87.03

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Query:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQ-PPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP
        MAQHSSSS   S SQSDPSLSRNSSLSRLNAQAPEFVPTRPS R DLQ PP SA GP PPPPKQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQ+P
Subjt:  MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQ-PPQSAPGPPPPPPKQSPRILIPS-PPPPPAIMHVYPPPPPGSPFHVPIQTP

Query:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        VPVPTHVVS+QN HHYH HHRHHHHSHHVPVLYHPHNPQYYADNGGFH+PDTVVQQ QKPQ E+DY APSR+KLTE+VS KLLNQ
Subjt:  VPVPTHVVSIQNHHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQ

SwissProt top hits

e value

%identity

Alignment

O80567 La-related protein 6B

9.2e-14

39.9

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Query:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT
        HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  
Subjt:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT

Query:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        H+V +QNHH +H  H+HHHH+ H     VPV  H    Q     GG  EPD V ++              Q  +  +     S+T L E+  QK++NQ
Subjt:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYGAPSRTKLTEEVSQKLLNQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G43970.1 RNA-binding protein

6.5e-15

39.9

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Query:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT
        HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  
Subjt:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT

Query:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        H+V +QNHH +H  H+HHHH+ H     VPV  H    Q     GG  EPD V ++              Q  +  +     S+T L E+  QK++NQ
Subjt:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYGAPSRTKLTEEVSQKLLNQ

AT2G43970.2 RNA-binding protein

6.5e-15

39.9

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Query:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT
        HS+SS   +SS SDPSL R+ SLSRLNA APEFVP R +                PP  Q PR++IP PPPP  ++H+Y   P   PF+ P+  PVP+  
Subjt:  HSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPT

Query:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYGAPSRTKLTEEVSQKLLNQ
        H+V +QNHH +H  H+HHHH+ H     VPV  H    Q     GG  EPD V ++              Q  +  +     S+T L E+  QK++NQ
Subjt:  HVVSIQNHHHYHPHHRHHHHSHH-----VPVLYHPHNPQYYADNGGFHEPDTVVQQ-------------PQKPQAESDYGAPSRTKLTEEVSQKLLNQ

Sequences

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CDS sequence

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ATGGCACAACATTCTTCCTCTTCGCCTCCCGATTCCTCTTCCCAATCCGATCCATCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCCCAGGCTCCTGAGTTCGT
CCCCACTCGCCCCTCCCCTCGTCCCGATCTACAACCGCCGCAGTCCGCCCCCGGCCCCCCGCCTCCTCCGCCCAAGCAATCGCCCCGGATTCTCATCCCTTCTCCTCCTC
CGCCGCCGGCCATCATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCCATTCAGAAT
CATCATCACTATCACCCTCATCACCGCCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGATAATGGTGGATTCCATGA
GCCCGACACCGTTGTGCAGCAACCTCAGAAGCCACAGGCTGAGTCCGACTATGGTGCTCCATCGAGGACTAAACTCACTGAGGAAGTCTCCCAAAAGCTTTTGAATCAGG
CACACATAGAGTTAGCTGGAAGTCAGGGTTACTTGAAAGGGTTTAAAACTCGCTAG

mRNA sequence

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Protein sequence

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MAQHSSSSPPDSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSPRPDLQPPQSAPGPPPPPPKQSPRILIPSPPPPPAIMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQN
HHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHEPDTVVQQPQKPQAESDYGAPSRTKLTEEVSQKLLNQAHIELAGSQGYLKGFKTR

Spg032537 (gene) of Sponge gourd (cylindrica) v1 genome