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Spg032540 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032540
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:23488217..23492635
RNA-Seq ExpressionSpg032540
SyntenySpg032540
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.2e-2351.2Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELYFESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GGVTKYIAERLEGAKSVIQRNREQN
          VT +   R+   ++  +R + QN
Subjt:  GGVTKYIAERLEGAKSVIQRNREQN

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1859.09Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELYFESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1952.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein5.9e-2451.2Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELYFESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GGVTKYIAERLEGAKSVIQRNREQN
          VT +   R+   ++  +R + QN
Subjt:  GGVTKYIAERLEGAKSVIQRNREQN

A0A5A7V9N3 Reverse transcriptase9.8e-1959.09Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELYFESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5A7VMG9 Reverse transcriptase2.5e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein8.9e-2052.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase2.5e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATTTTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGTGATCCAGCGAAACAGAGAG
CAAAACTGCCACGTCACAACTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATTTTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGTGATCCAGCGAAACAGAGAG
CAAAACTGCCACGTCACAACTCGTTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYFESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTKYIAERLEGAKSVIQRNRE
QNCHVTTR