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Spg032557 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032557
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold3:23072911..23075508
RNA-Seq ExpressionSpg032557
SyntenySpg032557
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]4.6e-0442.86Show/hide
Query:  GRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLGPLGPTGSSIRALSKIKD
        GRSEF  A   P   +   P+ G L+     A LT+AD RI+  +Q+FIVS G+R+SYLG     G  I   +KIK+
Subjt:  GRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLGPLGPTGSSIRALSKIKD
TrEMBL top hitse value%identityAlignment
A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass2.2e-0442.86Show/hide
Query:  GRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLGPLGPTGSSIRALSKIKD
        GRSEF  A   P   +   P+ G L+     A LT+AD RI+  +Q+FIVS G+R+SYLG     G  I   +KIK+
Subjt:  GRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLGPLGPTGSSIRALSKIKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGAGCGAATTCCGTCTTGCGAGACTATGTCCCCAGCTATCTATTCGATCTTTTCCCCAAAATGGTAGGCTTGTTGAGCCGGCGATGCTGGCCACTCTCACCCA
TGCAGATGAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGAATAAGAACGAGTTACCTAGGTCCATTAGGTCCCACCGGTAGCTCTATAAGGGCGTTGA
GCAAGATCAAGGACCTCTTGCTGCTGGTTTTGGGTGAAAATCTAGGAGATTTGGTGAAACAGTTCAAGAATTTCTACAAAGCTCCAGACGCTGTCGCGATTTCACGCTAC
GGATTGTTGAAATCGCGCCAGCGTCGGGACGCTATCGCTAAAGCGTCTCGACGCTGTCGCGATTTCGTGCGGCAGTTGGGATTTACGTGCAGACATGGGTTGAAACCCTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGAGCGAATTCCGTCTTGCGAGACTATGTCCCCAGCTATCTATTCGATCTTTTCCCCAAAATGGTAGGCTTGTTGAGCCGGCGATGCTGGCCACTCTCACCCA
TGCAGATGAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGAATAAGAACGAGTTACCTAGGTCCATTAGGTCCCACCGGTAGCTCTATAAGGGCGTTGA
GCAAGATCAAGGACCTCTTGCTGCTGGTTTTGGGTGAAAATCTAGGAGATTTGGTGAAACAGTTCAAGAATTTCTACAAAGCTCCAGACGCTGTCGCGATTTCACGCTAC
GGATTGTTGAAATCGCGCCAGCGTCGGGACGCTATCGCTAAAGCGTCTCGACGCTGTCGCGATTTCGTGCGGCAGTTGGGATTTACGTGCAGACATGGGTTGAAACCCTA
A
Protein sequenceShow/hide protein sequence
MGRSEFRLARLCPQLSIRSFPQNGRLVEPAMLATLTHADERIISYKQEFIVSSGIRTSYLGPLGPTGSSIRALSKIKDLLLLVLGENLGDLVKQFKNFYKAPDAVAISRY
GLLKSRQRRDAIAKASRRCRDFVRQLGFTCRHGLKP