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Spg032564 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032564
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:22878593..22927301
RNA-Seq ExpressionSpg032564
SyntenySpg032564
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1554Show/hide
Query:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRT-SSSSKFQEG----------QRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        D+EPEA  YRVHTGY+PLLTLSVLRDNDA+VEIE  V + L  S E+S +  S SKF  G          +++S+E+  V  LH +F++KLAG  GGGVT
Subjt:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRT-SSSSKFQEG----------QRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.8e-1853.04Show/hide
Query:  FRAFWVVQVESEALFDIE-PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRT
        F   WV++V    L ++E P      + TG +       LLTL+VL DNDA+VEIELPVSDTLP SAESS ++S S         + EDDV WLH +FR 
Subjt:  FRAFWVVQVESEALFDIE-PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRT

Query:  KLAGGPGGGVTTWYQ
        K AGGPGGGVTTWYQ
Subjt:  KLAGGPGGGVTTWYQ

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.8e-1568Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTW
        PL TLSVLRDNDAV EIELPV DTL TSAESS ++S S         +  DDV WLHAIFR K+ GGPGGGVTTW
Subjt:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTW

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]5.7e-1768Show/hide
Query:  TLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        TLSVL DNDAVVEIELPV+DTLPTSAESS ++S S         +  DDV WLH++FR K A GPGGGVTTWYQS
Subjt:  TLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1564.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSS---KFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGGV
        PL TLSVLRDNDAVVEIELPV DTLPTSAESS ++SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV
Subjt:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSS---KFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7SPZ6 DNA/RNA polymerases superfamily protein1.2e-1554Show/hide
Query:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRT-SSSSKFQEG----------QRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        D+EPEA  YRVHTGY+PLLTLSVLRDNDA+VEIE  V + L  S E+S +  S SKF  G          +++S+E+  V  LH +F++KLAG  GGGVT
Subjt:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRT-SSSSKFQEG----------QRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

A0A5D3BNX1 Zf-CCHC domain-containing protein8.8e-1668Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTW
        PL TLSVLRDNDAV EIELPV DTL TSAESS ++S S         +  DDV WLHAIFR K+ GGPGGGVTTW
Subjt:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTW

A0A5D3BSA6 Retrotrans_gag domain-containing protein8.5e-1953.04Show/hide
Query:  FRAFWVVQVESEALFDIE-PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRT
        F   WV++V    L ++E P      + TG +       LLTL+VL DNDA+VEIELPVSDTLP SAESS ++S S         + EDDV WLH +FR 
Subjt:  FRAFWVVQVESEALFDIE-PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRT

Query:  KLAGGPGGGVTTWYQ
        K AGGPGGGVTTWYQ
Subjt:  KLAGGPGGGVTTWYQ

A0A5D3CU23 Retrotrans_gag domain-containing protein2.7e-1768Show/hide
Query:  TLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        TLSVL DNDAVVEIELPV+DTLPTSAESS ++S S         +  DDV WLH++FR K A GPGGGVTTWYQS
Subjt:  TLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

A0A5D3DX39 Reverse transcriptase2.0e-1564.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSS---KFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGGV
        PL TLSVLRDNDAVVEIELPV DTLPTSAESS ++SS+    + E   V +        EDDV WLHA+FR K AGGPGGGV
Subjt:  PLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSS---KFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGATATTGAGCCCGAGGCTATATGGTATCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGC
TCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAAAGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGG
CTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGATATTGAGCCCGAGGCTATATGGTATCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGC
TCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAAAGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGG
CTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFPLVFRAFWVVQVESEALFDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVSDTLPTSAESSRTSSSSKFQEGQRVSLEEDDVRW
LHAIFRTKLAGGPGGGVTTWYQSS