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Spg032584 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032584
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold11:6675788..6676744
RNA-Seq ExpressionSpg032584
SyntenySpg032584
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6471955.1 hypothetical protein ZIOFF_069408 [Zingiber officinale]6.2e-1353.66Show/hide
Query:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK
        +  ET N S C+CGLRA L TSW + NPGRRF+ CP ++    GCGFF W DPELSE +K +IN       KL+ EI  LKK
Subjt:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK

KAG6505340.1 hypothetical protein ZIOFF_037695 [Zingiber officinale]4.7e-1353.66Show/hide
Query:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK
        +  ET N S C+CGLRA L TSW + NPGRRF+ CP ++    GCGFF W DPELSE +K +IN       KL+ EI  LKK
Subjt:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK

KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]7.3e-1456.58Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK
        CHCGLRA L TSWT+ NPGR F+ CP Y+ +     +GCGFF W DPELSE SK +IN       KL+ EI  LKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK

KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]2.8e-1342.28Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK-------------------------IAQ
        CHCGLRA L TSWT+ NPGRRF+ CP Y+    GCGFF W DPELSE SK +IN       KL+ EI  LKK                         ++ 
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK-------------------------IAQ

Query:  NLRRLEWLYRVIIVVLVGILVIV
         +  L   +RV I+V+V IL+++
Subjt:  NLRRLEWLYRVIIVVLVGILVIV

XP_042395711.1 uncharacterized protein LOC121986018 [Zingiber officinale]4.7e-1353.66Show/hide
Query:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK
        +  ET N S C+CGLRA L TSW + NPGRRF+ CP ++    GCGFF W DPELSE +K +IN       KL+ EI  LKK
Subjt:  DNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVIN-------KLRDEIGRLKK

TrEMBL top hitse value%identityAlignment
A0A2G9HUL6 DNA topoisomerase4.8e-1145.68Show/hide
Query:  SETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKKIAQNLRRL
        S  +  +YCHCG RA L TSWTK NPGRRF+ C  YK    GC FF W DP +   S  +I  L  +  R +     LRR+
Subjt:  SETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKKIAQNLRRL

A0A445HAE1 GRF-type domain-containing protein4.8e-1141.11Show/hide
Query:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFYWCDPELSEHSKEVINKLRDEIGRLKKIAQNLRRL
        E S     S+ ++  +C C + A L+TSWT+ NPGRRFYGC  YK  G+ GC FF W DP  +   K++I  L  E+  LK   ++L+ +
Subjt:  EESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFYWCDPELSEHSKEVINKLRDEIGRLKKIAQNLRRL

A0A5B7ACY3 GRF-type domain-containing protein3.6e-1143.96Show/hide
Query:  YCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVI-------NKLRDEIGRLKKIAQNLRRLE---WLYRVI
        YCHCG RA + TSWT  NPGRRF+GC    G+ SGCGFF W DP +   +++VI        +L  E+ RL+     LR  E   W + V+
Subjt:  YCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVI-------NKLRDEIGRLKKIAQNLRRLE---WLYRVI

A0A6V7NYI1 GRF-type domain-containing protein1.9e-1261.54Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKK
        C CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE I +L ++IGRLKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKK

A0A6V7P503 GRF-type domain-containing protein2.8e-1160Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKK
        C CGL+A   TS T  N GRRFYGC  YK N  GCGFF W DPE+ E  KE I +L ++IGRLKK
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein1.7e-0540.74Show/hide
Query:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSE
        +P   HC   A     +TS T++NP RRFY CP        CG+F WCD  L +
Subjt:  NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSE

AT3G42860.1 zinc knuckle (CCHC-type) family protein3.7e-0860.47Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCD
        C CG+   LI TS T +NPGR+FY CP  + NG GCGFF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCD

AT5G33393.1 unknown protein9.5e-0436.36Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELS-EHSKEVINKLRDEIGRLKK
        C+CG     I SWT  N GRRF+ C  +       GF  W D E      K  + + RDE+  LK+
Subjt:  CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELS-EHSKEVINKLRDEIGRLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGCCACAAAAACTTTCGAAAATTGCAATGGATAAGTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAATCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTTATTGGT
GTGATCCAGAATTATCAGAACACAGCAAAGAAGTGATTAACAAACTAAGAGACGAAATTGGTCGACTGAAGAAGATTGCACAAAACTTGCGTCGTTTGGAGTGGCTGTAT
CGGGTAATAATTGTAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGCCACAAAAACTTTCGAAAATTGCAATGGATAAGTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAATCCTAGCTACTGTCACTGTGG
GTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTTATTGGT
GTGATCCAGAATTATCAGAACACAGCAAAGAAGTGATTAACAAACTAAGAGACGAAATTGGTCGACTGAAGAAGATTGCACAAAACTTGCGTCGTTTGGAGTGGCTGTAT
CGGGTAATAATTGTAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
Protein sequenceShow/hide protein sequence
MSREMPQKLSKIAMDKFEESIRGDNSETKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFYWCDPELSEHSKEVINKLRDEIGRLKKIAQNLRRLEWLY
RVIIVVLVGILVIVFGF