; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032592 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032592
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S16
Genome locationscaffold11:5915158..5917824
RNA-Seq ExpressionSpg032592
SyntenySpg032592
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588049.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.3e-6395.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS
        RPVDPLSGRF TPQK +DDS+SSKDG+ADS
Subjt:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]7.8e-6494.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQKSDDSSSSKDGNADS
        RPVDPLSGRF+TP+K  D SSSKDGNADS
Subjt:  RPVDPLSGRFMTPQKSDDSSSSKDGNADS

XP_022933978.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata]7.8e-6496.15Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS
        RPVDPLSGRF TPQK +DDS+SSKDGNADS
Subjt:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS

XP_022968515.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]7.8e-6496.15Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS
        RPVDPLSGRF TPQK +DDS+SSKDG+ADS
Subjt:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS

XP_023529314.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]1.3e-6395.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRD+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS
        RPVDPLSGRF TPQK +DDS+S+KDGNADS
Subjt:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS

TrEMBL top hitse value%identityAlignment
A0A5D3CDW9 30S ribosomal protein S161.3e-5988.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQKS-DDSSSSKDGNADS
        RPVDPLSGRF+TP+K   DSS+ + G+ADS
Subjt:  RPVDPLSGRFMTPQKS-DDSSSSKDGNADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial3.8e-6494.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQKSDDSSSSKDGNADS
        RPVDPLSGRF+TP+K  D SSSKDGNADS
Subjt:  RPVDPLSGRFMTPQKSDDSSSSKDGNADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like3.8e-6496.15Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS
        RPVDPLSGRF TPQK +DDS+SSKDGNADS
Subjt:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS

A0A6J1H8S5 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like2.5e-6089.92Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQKSDDSSSSKDGNADS
        R VDPLSGR ++P+K  + SS KDGNADS
Subjt:  RPVDPLSGRFMTPQKSDDSSSSKDGNADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like3.8e-6496.15Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS
        RPVDPLSGRF TPQK +DDS+SSKDG+ADS
Subjt:  RPVDPLSGRFMTPQK-SDDSSSSKDGNADS

SwissProt top hitse value%identityAlignment
A5V9P7 30S ribosomal protein S164.2e-2056.1Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K+WLSVGAQP+D V R L  AGV
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV

A8LMC0 30S ribosomal protein S164.2e-2054.76Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P+D V R+L  A VLP
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP

O65686 30S ribosomal protein S16-1, chloroplastic6.2e-3254.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFM
         + V P++G  +
Subjt:  -RPVDPLSGRFM

Q5LNF2 30S ribosomal protein S163.2e-2055.42Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ +D V R+L  AGV+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial5.8e-5475.37Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFM-----TPQKSDDSSSSKDGNADS
        RPVDP++GR++     T   +D+    +D  A S
Subjt:  RPVDPLSGRFM-----TPQKSDDSSSSKDGNADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 164.4e-3354.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFM
         + V P++G  +
Subjt:  -RPVDPLSGRFM

AT5G56940.1 Ribosomal protein S16 family protein4.1e-5575.37Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFM-----TPQKSDDSSSSKDGNADS
        RPVDP++GR++     T   +D+    +D  A S
Subjt:  RPVDPLSGRFM-----TPQKSDDSSSSKDGNADS

ATCG00050.1 ribosomal protein S164.9e-0834.57Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  +AG+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCGGCCGATAGCAGATCTCCCAGAGACGGCAAGCATCTCGAGGTTCT
TGGTTACTATAATCCCCTCCCAGGTCAAGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTACTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCGGTGC
AGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCACCTCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTC
ATGACTCCACAGAAGTCTGATGATTCCAGTAGCAGCAAAGATGGCAACGCTGATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCGGCCGATAGCAGATCTCCCAGAGACGGCAAGCATCTCGAGGTTCT
TGGTTACTATAATCCCCTCCCAGGTCAAGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTACTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCGGTGC
AGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCACCTCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTC
ATGACTCCACAGAAGTCTGATGATTCCAGTAGCAGCAAAGATGGCAACGCTGATTCATAA
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF
MTPQKSDDSSSSKDGNADS